| Apollo |
- Apollo
Tutorial 2011
-
The Apollo session from the 2011 GMOD Spring Training
- Apollo
Tutorial 2010
-
The Apollo session from the 2010 GMOD Summer School -
Americas.
- Apollo tutorials at the Dynamic Gene web site.
-
Flash based tutorials on how to use Apollo, using rice as an example.
Sections of particular interest are
- Annotation - how to use
Apollo
- Resources - how to download
sample data and install Apollo on an MS Windows system.
- Apollo user guide
-
The current user guide, which has comprehensive instructions for
installation and usage of Apollo.
|
| BioMart |
- BioMart
Tutorial
-
Based on the BioMart workshop at the October 2011 GMOD Meeting.
|
| Chado |
- Chado Tutorial
-
Based on the Chado session from the 2013 GMOD Summer School.
- Artemis-Chado Integration
Tutorial
-
Based on the session of the same title from the 2009 GMOD Summer School -
Europe.
|
| GMOD in the Cloud |
- AWS
walkthrough
-
A gentle introduction to getting a machine up and running on the Amazon
Cloud
|
| CMap |
Tutorial @ Gramene |
| Galaxy |
- Galaxy Tutorial
-
As taught at the 2013 GMOD Summer School
- Galaxy Learning Hub
-
-
A wealth of training materials, including:
- RNA-Seq Example
-
An introduction to NGS processing (specifically RNA-Seq) with Galaxy.
- OpenHelix Galaxy User
Tutorial
-
A Flash based tutorial on using Galaxy. Provided by OpenHelix. Tutorial includes slides, handouts and
exercises. Requires subscription.
|
| GBrowse |
- GBrowse tutorial
from 2012 GMOD Summer School. This relies heavily on the GBrowse2 Admin Tutorial.
-
Demonstrates setting up, configuring and using GBrowse with some sample data. GBrowse is provided
on an Amazon Machine Image; see GMOD in
the Cloud for more information on getting a GMOD AMI.
- GBrowse tutorial from 2010 GMOD Summer
School
-
Set up and run GBrowse with
sample data. It provides a VMware image to work on, and relies heavily
on the GBrowse2 Admin Tutorial.
- GBrowse2 Admin Tutorial
-
Step by step guide on how to configure and load data into GBrowse. Administration tutorials
are available for both the GBrowse2 Admin Tutorial, and
the earlier 1.x versions.
- Usage tutorial
-
GBrowse usage tutorial
- GBrowse
NGS Tutorial
-
Instructions on how to visualize next generation
sequencing data in GBrowse using SAMtools. The tutorial includes a starting VMware
image, and uses the example data that comes with SAMtools.
- GBrowse video tutorial
-
Produced by EuPathDB; please direct praise and thanks to them!
- GBrowse User Tutorial at OpenHelix
-
A Flash based tutorial on using GBrowse. Provided by OpenHelix. Tutorial includes slides, handouts and
exercises. NB: this tutorial is for GBrowse 1.x
|
| GBrowse_syn |
- GBrowse syn Tutorial
-
Installing and configuring GBrowse_syn; from the 2013 GMOD
Summer School
|
| GFF3 |
- GFF3
-
Introduction to and documentation of the GFF3 format
|
| JBrowse |
- JBrowse Tutorial covering installation and
configuration
-
part of the 2013 GMOD Summer School
- Getting Started with JBrowse
Tutorial
-
part of the JBrowse documentation
- Exploration
of structural variation in the tomato clade using JBrowse
-
Tutorial explaining how to browse structural variants from the 150+
tomato genome resequencing project (http://www.tomatogenome.net) using JBrowse
|
| MAKER |
- MAKER Tutorial
-
taught as part of the 2013 GMOD Summer School
|
| Pathway
Tools |
- Pathway Tools slides
-
General information about Pathway Tools, including slides from tutorials
and user guides
- Upcoming Events
-
Pathway Tools tutorials and workshops
|
| SOBA |
- SOBA Tutorial
-
taught as part of the 2013 GMOD Summer School
|
| Tripal |
- Tripal
Tutorial v1.1
-
used during the 2013 GMOD Summer School
- Tripal Tutorial (v1.0)
-
used during the 2012 GMOD Summer School
- Tripal Tutorial (v0.3.1b)
-
The full v0.3.1b tutorial
- Tripal Tutorial (v0.3.1b
VM)
-
for use with the Tripal virtual machine
- Tripal Tutorial (pre version
0.3b)
-
from the 2010 GMOD Spring School
|
| WebApollo |
- WebApollo Tutorial
-
taught as part of the 2013 GMOD Summer School
|