Status
Licence
GNU GPL (for academics), Artistic License 2.0 (for academics), custom license for commercial usage
Resources
Facts about “MAKER”
Available on platform | linux +, os x + and unix + |
Has URL | http://www.yandell-lab.org/software/maker.html +, http://yandell.topaz.genetics.utah.edu/cgi-bin/maker_license.cgi +, https://www.e-biogenouest.org/resources/48 +, http://www.yandell-lab.org/software/maker-p.html +, http://derringer.genetics.utah.edu/cgi-bin/MWAS/maker.cgi + and http://hymenopteragenome.org/ant_genomes/ + |
Has description | MAKER is an easy-to-configure, portable ge … MAKER is an easy-to-configure, portable genome annotation
pipeline. MAKER allows smaller eukaryotic genome projects and
prokaryotic genome projects to annotate their genomes and to
create genome databases. MAKER identifies repeats, aligns ESTs and
proteins to a genome, produces ab initio gene predictions and
automatically synthesizes these data into gene annotations with
evidence-based quality values. MAKER is also easily trainable: outputs
of preliminary runs can be used to automatically retrain its gene
prediction algorithm, producing higher quality gene-models on subsequent
runs. MAKER's inputs are minimal. Its outputs are in GFF3 or FASTA format, and can be directly loaded into Chado, GBrowse, JBrowse, WebApollo or Apollo.
For those annotating novel plant genomes, the MAKER-P pipeline is designed to make the annotation tractable for small groups with limited bioinformatics experience and resources, and faster and more transparent for large groups with more experience and resources. The MAKER-P pipeline generates species-specific repeat libraries, as well as structural annotations of protein coding genes, non-coding RNAs, and pseudogenes. The MAKER-P website has more information on the additional protocols for plant genome annotation. Additional MAKER options and capabilities include:
/data directory in the download. /data
directory in the download. , Review article on
eukaryotic genome annotation from the MAKER team. ,
MAKER with additional software for plant genome annotation ,
online version of the MAKER tool
and The ant genomes were annotated using MAKER. |
Has development status | active + |
Has input format | GFF3 + and FASTA + |
Has licence | GNU GPL (for academics) +, Artistic License 2.0 (for academics) + and custom license for commercial usage + |
Has logo | MAKERLogo.png + |
Has output format | GFF3 + and FASTA + |
Has software maturity status | mature + |
Has support status | active + |
Has title | A beginner's guide to eukaryotic genome annotation +, MAKER-P +, MAKER Web Annotation Server + and Ant Genomes Portal + |
Has topic | MAKER + |
Is open source | Caveats apply + |
Link type | download +, source code +, website +, publication +, other + and public server + |
Release date | 2008 + |
Tool functionality or classification | Genome Annotation + |
Written in language | Perl + |
Has subobjectThis property is a special property in this wiki. | MAKER#http://www.yandell-lab.org/software/maker.html +, MAKER#http://yandell.topaz.genetics.utah.edu/cgi-bin/maker_license.cgi +, MAKER#https://www.e-biogenouest.org/resources/48 +, MAKER#http://www.yandell-lab.org/software/maker-p.html +, MAKER#http://derringer.genetics.utah.edu/cgi-bin/MWAS/maker.cgi + and MAKER#http://hymenopteragenome.org/ant_genomes/ + |