GMOD

GBrowse

(Redirected from Generic Genome Browser

GBrowse logo

Status

Licence

} is open source

GPL 2.0, Artistic License 2.0

Resources

Facts about “GBrowse”

Available on platform web +
Has URL http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ +, https://github.com/GMOD/GBrowse +, http://gbrowse.org +, http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ +, http://flybase.org/cgi-bin/gbrowse/dmel + and http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +
Has description GBrowse is a combination of database and i … GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Features include:
  • Simultaneous bird's eye and detailed views of the genome.
  • Scroll, zoom, center.
  • Use a variety of premade glyphs or create your own.
  • Attach arbitrary URLs to any annotation.
  • Order and appearance of tracks are customizable by administrator and end-user.
  • Search by annotation ID, name, or comment.
  • Supports third party annotation using GFF formats.
  • Settings persist across sessions.
  • DNA and GFF dumps.
  • Connectivity to different databases, including BioSQL and Chado.
  • Multi-language support.
  • Third-party feature loading.
  • Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features)
Note that the information on this page refers to GBrowse 2; GBrowse 1.x is recommended only for applications where legacy browser support is required and a single database is used.is required and a single database is used.
Has development status inactive +
Has full name Generic Genome Browser +
Has input format GFF3 + and GFF2 +
Has licence GPL2 + and Artistic License +
Has logo GBrowseLogo.png +
Has software maturity status mature +
Has support status inactive +
Has title WormBase +, FlyBase + and HapMap +
Has topic GBrowse +
Is open source Yes +
Link type download +, source code +, website + and wild URL +
Release date 1 January 2001 +
Tool functionality or classification Genome Visualization & Editing +
Written in language Perl +
Has subobjectThis property is a special property in this wiki. GBrowse#http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ +, GBrowse#https://github.com/GMOD/GBrowse +, GBrowse#http://gbrowse.org +, GBrowse#http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ +, GBrowse#http://flybase.org/cgi-bin/gbrowse/dmel + and GBrowse#http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +

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