| Gbrowse |
| | | |—-|—-| | Available on platform | web + | | Has URL | http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ + , https://github.com/GMOD/GBrowse + , http://gbrowse.org + , http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ + , http://flybase.org/cgi-bin/gbrowse/dmel + , http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse + | | Has description | GBrowse is a combination of database and i … GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Features include: * Simultaneous bird’s eye and detailed views of the genome. * Scroll, zoom, center. * Use a variety of [[GBrowse Configuration HOWTO#Glyphs and Glyph Options|premade glyphs]] or create your own. * Attach arbitrary URLs to any annotation. * Order and appearance of tracks are customizable by administrator and end-user. * Search by annotation ID, name, or comment. * Supports third party annotation using [[GFF]] formats. * Settings persist across sessions. * DNA and [[GFF]] dumps. * Connectivity to different databases, including [[BioSQL]] and [[Chado]]. * Multi-language support. * Third-party feature loading. * Customizable [[GBrowse Plugins|plug-in]] architecture (e.g. run [[wp:BLAST|BLAST]], dump & import many formats, find oligonucleotides, [[PrimerDesigner.pm|design primers]], create restriction maps, edit features) Note that the information on this page refers to GBrowse 2; GBrowse 1.x is recommended only for applications where legacy browser support is required and a single database is used.is required and a single database is used. + | | Has development status | inactive + | | Has full name | Generic Genome Browser + | | Has input format | GFF3 + , GFF2 + | | Has licence | GPL2 + , Artistic License + | | Has logo | GBrowseLogo.png + | | Has software maturity status | mature + | | Has support status | inactive + | | Has title | WormBase + , FlyBase + , HapMap + | | Has topic | GBrowse + | | Is open source | Yes + | | Link type | download + , source code + , website + , wild URL + | | Release date | 1 January 2001 + | | Tool functionality or classification | Genome Visualization & Editing + | | Written in language | Perl + | | Has queryThis property is a special property in this wiki. | GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + , GBrowse + | | Categories | GBrowse + , GMOD Components + , GMOD Component + , SemanticLink + | | Modification dateThis property is a special property in this wiki. | 10 April 2023 16:47:07 + | | Has subobjectThis property is a special property in this wiki. | GBrowse#http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ + , GBrowse#https://github.com/GMOD/GBrowse + , GBrowse#http://gbrowse.org + , GBrowse#http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ + , GBrowse#http://flybase.org/cgi-bin/gbrowse/dmel + , GBrowse#http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse + |
| hide properties that link here |
| | | |—-|—-| | GBrowse + , GBrowse NGS Tutorial + , GBrowse Tutorial 2012 + , GMOD Malaysia 2014/GBrowse Tutorial + | Has topic | | BioMart + , DIYA + , InterMine + , Tripal + | Interacts with | | Gbrowse + , Gbrowse installation + , Generic Genome Browser + , Ggb + , Ggb/ + , Ggb/INSTALL.html + , Ggb/ppm + | redirect page |
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