GMOD
GMOD Mailing Lists
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Contents
- 1 Searching Email Lists
- 2 Posting to and Membership in Email Lists
- 3 Overview Lists
- 4 Component Lists
- 5 Topic Based Lists
- 6 Inactive Lists
- 7 A Few Non GMOD Lists
This page lists most of the mailing lists relevant to GMOD. The default location for GMOD related lists is SourceForge, but lists are actually implemented on various servers all over the world.
The lists are broken into several categories:
We also include pointers to a few non GMOD lists that are of general interest.
Searching Email Lists
SearchArchive |
GMOD's default mailing list server is Sourceforge. Sourceforge, however, has a notoriously hard to use mail archive search facility. Therefore, we try to archive mailing lists on sites that have friendlier search facilites, such as Nabble, Gmane.org, and Google groups. The tables below link to these archives, whenever they exist. |
Posting to and Membership in Email Lists
Most GMOD lists require you to be a member of the list to post to the list. If you aren’t a member, your post will be deferred until one of that list’s managers has a chance to review your posting. Therefore, we strongly suggest that join a list before posting to it.
Overview Lists
| Topic | List Link | Comment | Archive(s) | |—-|—-|—-|—-| | Announcements | gmod-announce | Low volume GMOD announcements. Moderated. | Gmane, Nabble (2010/05+), Sourceforge | | GMOD Developers List | gmod-devel | General GMOD developer list. | Gmane, Nabble (2010/05+), Sourceforge |
Component Lists
Mailing lists about specific GMOD Components.
| Component | Subscribe Link | Comment | Archive(s) |
|---|---|---|---|
| Apollo and WebApollo | apollo | Apollo and WebApollo mailing list | Gmane (2008/04-2010/10), Nabble (2010/05+) |
| gmod-apollo-cmts | Apollo and WebApollo code updates. | ||
| BioMart | announce | BioMart announcements mailing list | Nabble (2010/06+) |
| users | BioMart users, developers, code and installation | Nabble (2010/06+) | |
| Chado | gmod-schema | All issues regarding Chado, Chado%253A%253AAutoDBI, and Bio%253A%253AChado%253A%253ASchema | Gmane, Nabble (2010/05+), Sourceforge |
| gmod-schema-cmts | Chado code updates. | Sourceforge | |
| Galaxy (Search everything) |
galaxy-announce | Announcements of interest to the Galaxy community. Low volume and moderated. | Nabble, Mailman |
| Galaxy Help | General questions and discussion about using Galaxy. Also used for announcements relevant to the Galaxy user community. This is not a mailing list, but an online forum, based on the popular Discourse platform. High volume. | ||
| galaxy-dev | Discussion and questions regarding local installations and development of Galaxy. Medium volume. | Nabble, Mailman | |
| GBrowse & GBrowse_syn | gmod-gbrowse | GBrowse and GBrowse_syn users and developers. | |
| gmod-gbrowse-cmts | Code updates. | ||
| InterMine | dev | InterMine support and development list. | |
| JBrowse | gmod-ajax | JBrowse help and general questions. | Nabble (2010/05+), Sourceforge |
| jbrowse-dev | JBrowse development discussions. | Nabble (2011/08+) | |
| MAKER | maker-devel | MAKER developers and users list. | Google, Nabble (2010/05+) |
| Pathway Tools | ptools-users@ai.sri.com | Pathway Tools users list. To subscribe to this list, send a request to ptools-support@ai.sri.com. | None |
| Sybil | sybil-info | Sybil mailing list. | Sourceforge |
| Textpresso | A support mailing list and a community web site are under development for Textpresso. In the mean time, if you have support questions, please send them to textpresso@caltech.edu. See the Textspresso website for help. | ||
| Tripal | gmod-tripal | Tripal-related announcements, questions, and requests for help from developers and the community. | Nabble (2010/05+), Sourceforge |
| gmod-tripal-devel | Tripal development list | Nabble, Sourceforge |
Topic Based Lists
These mailing lists are about general topics of interest, rather than about specific software components.
| Name | List Link | Topics | Archive(s) | |—-|—-|—-|—-| | CoGePhy | gmod-cogephy | Discussion of comparative genomics, phylogeny, and related topics. | Nabble, SourceForge | | PhenDiver | gmod-phendiver | Discussion of phenotype, natural diversity, population genetics and related topics. | Nabble, SourceForge |
Inactive Lists
As of May 2016
As of May 2016, these lists have not had postings in the past 12 months.
| Component | Subscribe Link | Comment | Archive(s) | |—-|—-|—-|—-| | Bio::Graphics | gmod-biographics-commits | Bio::Graphics code updates. | Sourceforge | | CMap | gmod-cmap | Discussion of CMap development, installation problems, etc. | Nabble (2010/05+), Sourceforge | | | gmod-cmap-commits | Notification of SVN activity for CMap. | Sourceforge | | DIYA | diyg-pub-l | DIYA general discussion and support. | Nabble (2010/05+) | | | diyg-dev-l | DIYA developer discussion. | | | Ergatis | ergatis-users | Ergatis users mailing list. | Nabble (2010/05+), Sourceforge | | | announcement | Ergatis announcements. | Nabble (2010/05+), Sourceforge | | | ergatis-devel | Ergatis developers. | Nabble (2010/05+), Sourceforge | | ISGA | isga-users | ISGA support, development, and announcements mailing list | Nabble | | Modware | gmod-ware-users | Modware support and developer mailing list. | Nabble (2010/05+), Sourceforge | | WebGBrowse | gmod-webgbrowse | Questions, announcements, and development postings about the WebGBrowse front end to GBrowse configuration. | Nabble, Sourceforge |
As of August 2008
As of August 2008, these lists have not had postings in the past 12 months.
| List | Comment |
|---|---|
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-architecture” | |
| class=”external text” rel=”nofollow”>gmod-architecture</a> | GMOD architecture working group list. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-chado-seq-ad” | |
| class=”external text” rel=”nofollow”>gmod-chado-seq-ad</a> | Last post November 2006. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-citrina” | |
| class=”external text” rel=”nofollow”>gmod-citrina</a> | Citrina mailing list. Last post June 2006. Citrina is no longer supported by GMOD. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-cmae” | |
| class=”external text” rel=”nofollow”>gmod-cmae</a> | CMAE mailing list. Last post July 2007. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-das2-cmts” | |
| class=”external text” rel=”nofollow”>gmod-das2-cmts</a> | Distributed Annotation System mailing list. Last commit June 2007. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-gene-page” | |
| class=”external text” rel=”nofollow”>gmod-gene-page</a> | Last post December 2005. *This topic was restarted at the July 2008 GMOD Meeting and the discussion is now happening on the <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-devel” |
| class=”external text” rel=”nofollow”>gmod-devel</a> list.* So, the list is dead, but not the topic. | |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-ontol-sw-dev” | |
| class=”external text” rel=”nofollow”>gmod-ontol-sw-dev</a> | Coordination of software and architecture for ontologies. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-pubsearch-dv” | |
| class=”external text” rel=”nofollow”>gmod-pubsearch-dv</a> | PubSearch mailing list. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-resources” | |
| class=”external text” rel=”nofollow”>gmod-resources</a> | Last post July 2005. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/gmod-web-cmts” | |
| class=”external text” rel=”nofollow”>gmod-web-cmts</a> | Last post December 2004. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/turnkey-users” | |
| class=”external text” rel=”nofollow”>turnkey-users</a> | Turnkey user list. Last post 2008. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/turnkey-devel” | |
| class=”external text” rel=”nofollow”>turnkey-devel</a> | Turnkey development list. Last post 2008. |
| <a href=”https://lists.sourceforge.net/lists/listinfo/turnkey-cmts” | |
| class=”external text” rel=”nofollow”>turnkey-cmts</a> | Turnkey code updates. |
A Few Non GMOD Lists
There are a couple of mailing lists that, while not affiliated with GMOD, often have content of interest to the GMOD community.
| List Link(s) | Comment | Archive(s) | |—-|—-|—-| | ISB (formerly Biocurator) | List for biological data curators and informatics people who support them. If you are interested in how biological databases are created, maintained and used, then subscribe to this list. | TAIR (2009/12-) | | Bioperl-l | Primary BioPerl mailing list and is meant both for developers as well as people who are interested in project issues and internals. The place where usage, code modifications, bugs & feature requests are discussed. If you do development with any of GMOD’s Perl based components then this is a useful list. | | | OBF cross-project | This list is for Open Bioinformatics Foundation (OBF) projects to cross talk such as for OBDA and BioSQL issues. | |