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Resources
Screenshot of the Ergatis pipeline builder
More information is available at:
http://ergatis.sourceforge.net
Currently, only loosely. As described above, Ergatis has been used at TIGR (now part of JCVI) for the majority of annotation and comparative genomics computation and the output of many of the components (such as blast, gene predictions, clustering etc.) can be loaded automatically into a chado database instance. In the past, due to its primary use at TIGR/JCVI, the database support was limited to Sybase, though flat-files could also be generated. Development is now underway to port this to also support PostgreSQL and Oracle.
Joshua Orvis is the lead developer of Ergatis and is currently at the Institute for Genome Sciences at the University of Maryland School of Medicine.
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