GMOD
GBrowse syn
Status
- Beta release
- Development: inactive
- Support: inactive
Resources
above).
GBrowse_syn uses a central “reference species” panel, with inset panels above and below for two or more aligned species. There is no upper limit to the number of species that can be displayed.
Publications, Tutorials, and Presentations
Publications on or mentioning GBrowse_syn
Please refer to the following paper when citing GBrowse_syn:
- Using the Generic Synteny Browser (GBrowse_syn) [1]
Tutorials
GBrowse syn Tutorial
Installing and configuring GBrowse_syn; from the 2013 GMOD Summer
School
Presentations
- GMOD in the Cloud
- GMOD Components
- Tool data
- GBrowse syn
- GMOD Developers
- GBrowse
- Comparative Genomics
- WormBase
Facts about “GBrowse syn”
| | | |—-|—-| | Available on platform | web + | | Has URL | https://github.com/GMOD/GBrowse +, http://mckay.cshl.edu/cgi-bin/gbrowse_syn/mercator/?search_src=Cbri%3Bname=chrX:620000..670000 +, http://www.arabidopsis.org/cgi-bin/gbrowse_syn/arabidopsis/?name=Chr1%253A8367000..8370501 +, http://dev.wormbase.org/db/seq/gbrowse_syn/compara?search_src=Cele%3Bname=X:1050001..1150000 + and http://solgenomics.net/gbrowse2/bin/gbrowse_syn/sol3/ + | | Has description | GBrowse_syn, or the Generic Synteny Browse … GBrowse_syn, or the Generic Synteny Browser, is a GBrowse-based synteny browser designed to display multiple genomes, with a central reference species compared to two or more additional species. It can be used to view multiple sequence alignment data, synteny or co-linearity data from other sources against genome annotations provided by GBrowse. GBrowse_syn is included with the standard GBrowse package (version 1.69 and later). GBrowse package (version 1.69 and later). | | Has development status | active + | | Has download URL | https://github.com/GMOD/GBrowse + | | Has full name | Generic Synteny Browser + | | Has logo | GBrowse_syn_logo.png + | | Has software maturity status | beta release + | | Has support status | active + | | Has title | The Arabidopsis Information Resource +, WormBase + and Sol Genomics + | | Has topic | GBrowse syn + | | Is open source | Yes + | | Link type | download +, source code +, demo server + and wild URL + | | Release date | 1 January 2007 + | | Tool functionality or classification | Comparative genome visualization + | | Written in language | Perl + | | Has subobjectThis property is a special property in this wiki. | GBrowse syn#https://github.com/GMOD/GBrowse +, GBrowse syn +, GBrowse syn +, GBrowse syn + and GBrowse syn#http://solgenomics.net/gbrowse2/bin/gbrowse_syn/sol3/ + |
