GMOD

CMap

CMap logo

Status

Licence

is open source

GPL

Resources

Contents

1 About CMap

1.1 Screenshots

2 Downloads

3 Using CMap

4 Documentation

5 Publications, Tutorials, and Presentations

6 Contacts and Mailing Lists

7 CMap in the wild

8 CMap Development

About CMap

A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species. The CMap package also includes tools for curating map data.

Screenshots

Here are some sample maps from the Gramene Project. See also other Gramene views.

Cmap sample1.jpg

Cmap sample2.jpg

Cmap sample3.jpg

Downloads

Using CMap

System Requirements

Documentation

Also see the CMap FAQ.

Publications, Tutorials, and Presentations

Publications on or mentioning CMap

Tutorials

Tutorial @ Gramene

Presentations

Contacts and Mailing Lists

Mailing List Link

Description

Archive(s)

CMap

gmod-cmap

Discussion of CMap development, installation problems, etc.

Nabble (2010/05+), Sourceforge

gmod-cmap-commits

Notification of <span class=”mw-redirect” hhttp:=”” gmod.org=”” wiki=”” ref=”/wiki/SVN”>SVN</span> activity for CMap.

Sourceforge

CMap in the wild

Public installations of CMap:

CMap Development

Development team

Lincoln Stein, Doreen Ware, Ben Faga, Ken Youens-Clark

Current status

No development in several years. Future development at Gramene.org hopes to replace CMap with a lighter, Javascript version.

See also

CMap3D

More on CMap

See Category%253ACMap

The CMap logo was created by Kathy Bracken, a participant in the Spring 2010 Logo Program, while a design student at Linn-Benton Community College.

  1. ↑ PMID:19648141

</span>

Available on platform

web +

Has URL

http://sourceforge.net/projects/gmod/files/cmap/ +, https://gmod.svn.sourceforge.net/svnroot/gmod/cmap +, http://www.gramene.org/db/cmap +, http://www.gramene.org/cmap +, http://www.comparative-legumes.org/ +, http://racerx00.tamu.edu/cgi-bin/cmap/viewer +, http://bioinformatics.pbcbasc.latrobe.edu.au/basc/cgi-bin/index.cgi +, http://rye.pw.usda.gov/cgi-bin/cmap/map_set_info?map_set_aid=Barley_consensus_2003 +, http://magi.plantgenomics.iastate.edu/cgi-bin/cmap/map_set_info +, http://www.bioinfo.wsu.edu/cgi-bin/gdr/cmap/map_set_info?map_set_aid=17 +, http://www.cottonmarker.org/ +, http://bioinf.scri.sari.ac.uk/ +, http://www.pristionchus.org/cgi-bin/cmap/viewer?ref_map_set_aid=PM%3Bref_map_aids=109 +, http://medvet.angis.org.au/cmap/ +, http://soybeanbreederstoolbox.org/index.php +, http://map.lab.nig.ac.jp:8080/cmap/ +, http://peanutgenetics.tamu.edu/cmap/ +, http://www.cottondb.org/cmap/ +, http://tropgenedb.cirad.fr + and http://cricket.ornl.gov/cgi-bin/cmap/map_set_info +

Has description

A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species. The CMap package also includes tools for curating map data. +, Comparative mapping resource for grasses (plant) +, A publicly accessible legume resource that will integrate genetic and molecular data from multiple legume species and enable cross-species comparisons +, The Honey Bee genome database + and Brassica database +

Has&##160;development status

inactive +

Has&##160;input format

tab-delimited + and GFF +

Has licence

GPL +

Has logo

CMapLogo-horiz.png +

Has output format

tab-delimited +

Has softwa#160;software maturity status

mature +

Has support status

active +

Has title

Gramene +, NCGR’s Legume Information System +, BeeBase +, BASC +, GrainGenes +, MAGI +, Genome Database for Rosaceae +, Cotton Marker Database +, SCRI Plant Bioinformatics Group +, Pristionchus pacificus Physical Map +, Comparitive Location Database +, Soybean Breeders Toolbox +, Composite Wheat Map +, PeanutMap +, CottonDB +, TropGene + and Populus at Oak Ridge +

Has topic

CMap +

Is open source

Yes +

Link type

download +, source code +, demo server +, public server + and wild URL +

Release date

2002 +

Tool functionality or classification

Genome Visualiz#160;functionality or classification

Genome Visualization & Editing +, Comparative Genome Visualization + and Database schema +

Written in language

Perl +

Has subobjectThis property is a special property in this wiki.

CMap#http://sourceforge.net/projects/gmod/files/cmap/ +, CMap#https://gmod.svn.sourceforge.net/svnroot/gmod/cmap +, #http:.2F.2Fwww.gramene.org.2Fdb.2Fcmap” title=”CMap”>CMap#http://www.gramene.org/db/cmap +, <a href=”/wiki/CMap#http:.2F.2Fwww.gramene.org.2Fcmap” title#http:.2f.2fwww.gramene.org.2fcmap”=”” title=”CMap”>CMap#http://www.gramene.org/cmap</a> +, CMap#http:#http:.2F.2Fwww.comparative-legumes.org.2F” title=”CMap”>CMap#http://www.comparative-legumes.org/ +, CMap#http://racerx00.tamu.edu/cg#http:.2F.2Fracerx00.tamu.edu.2Fcgi-bin.2Fcmap.2Fviewer” title=”CMap”>CMap#http://racerx00.tamu.edu/cgi-bin/cmap/viewer +, CMap#http://bioinformatics.pbcbasc.latrobe.edu.au/basc/cgi-bin/index.cgi #http://bioinformatics.pbcbasc.latrobe.edu.au/basc/cgi-bin/index.cgi +, CMap +, CMap#http://magi.plantgenomics.iastate.edu/cgi-bin/cmap/map_set_info [+](/wiki/Special%253ASearchByProperty/Has-20subobject/CMap-23http%253A-2F-2Fmagi.plantgenomics.iastate.edu-2Fcgi-2Dbin-2Fcmap-2Fmap_set_info “Special%253ASearchByProperty/Has-20subobject/CMap-23http:-2F-2Fmagi.plantgenomics.iastate.edu-2Fcgi-2Dbin-2Fcmap-2Fmap set info”), CMap +, CMap#http://www.cottonmarker.org/ +, CMap#http://bioinf.scri.sari.ac.uk/ +, CMap +, CMap#http:.2F.2Fmedvet.angis.org.au.2Fcmap.2F” title=”CMap”>CMap#http://medvet.angis.org.au/cmap/ +, CMap#http://soybeanbreed#http:.2F.2Fsoybeanbreederstoolbox.org.2Findex.php” title=”CMap”>CMap#http://soybeanbreederstoolbox.org/index.php +, CMap#http:#http:.2F.2Fmap.lab.nig.ac.jp:8080.2Fcmap.2F” title=”CMap”>CMap#http://map.lab.nig.ac.jp:8080/cmap/ +, CMap#http://#http:.2F.2Fpeanutgenetics.tamu.edu.2Fcmap.2F” title=”CMap”>CMap#http://peanutgenetics.tamu.edu/cmap/ +, CMap#http://www.cottondb.org/cmap/ +, <a href=”/wiki/CMap#http:.2F.2Ftropgenedb.cirad.fr” t#http:.2f.2ftropgenedb.cirad.fr”=”” title=”CMap”>CMap#http://tropgenedb.cirad.fr</a> + and CMap#http://cricket.ornl.gov/cgi-bin/cmap/map_set_info +

Documentation

Community

Tools