GMOD Generic Model Organism Database
June 29-30 NESCent, Durham, NC
June 29
8:30 Shuttle from hotel to NESCent
9:00 Introductions - Scott Cain
9:20 About NESCent - Todd Vision, Kathleen Smith
9:30 Project updates - GBrowse, Apollo, PubSearch SGD-gmod.pp SGD etc
10:45 Coffee break
11:00 Whats_new.ppt GMOD Update, including:
12:00 Lunch
1:15 SynBrowse–What’s new and obtaining/creating data for use.
Xiaokang Pan, Iowa State University
1:45 gmodj06-genomegrid-dgg.pdf GMODTools, gff2biomart, and genome grid
tools
Don Gilbert, Indiana University
2:15 BioMart
Arek Kasprzyk, EBI
2:45 Coffee
3:00 biocyc-GMOD-2006.ppt Pathway Tools
Suzanne Mercer Paley, SRI
3:30 GMOD Architecture Working Group - GMOD_Architecture.ppt Finding
requirements for a ‘toy’ application for testing middleware
Scott Cain as a proxy for Eric Just, DictyBase
4:30 GMOD organizational stuff
5:00 Break for dinner
June 30
8:30 Shuttle from hotel to NESCent
9:00 Todd Vision - vision.pdf NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization
9:15 Terry Casstevens - GDPDM_GMOD_presentation20060630.ppt The Genomic Diversity and Phenotype Data Model
9:40 John Willis - willis.pdf Mimulus as an example of an evolutionary model system
9:55 Owen McMillan - mcmillan.pdf Extension of Chado for Heliconius
10:10 David Kidd - kidd.pdf Visualizing phylogeographic patterns
10:30 Coffee
10:45 Jason Stajich - Stajich_GMOD_2006-06-30.pdf Fungal comparative genomics
11:10 Hilmar Lapp - lapp.pdf An evolutionary ontology proposal
11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation
12:00 Lunch
1:15 (Presentations, show and tell, depends on what suggestions we get).