JBrowseMSA

An interactive multiple sequence alignment viewer with a phylogenetic tree, protein domains and many color schemes, scaling to tens of thousands of rows.

Twelve NLRP1 orthologs with their InterPro domains and tree. Drag the alignment to scroll.

• Standalone app
• Tutorials
• Examples
• User guide
• Layers
• URL parameters
• Embedding
• R package
• Python package
• CLI