JBrowseMSA
An interactive multiple sequence alignment viewer.
Documentation
User guide
Features, file formats, and a tour of the app.
Embed in React
Add the viewer to your app: props, model API, UMD bundle.
Interactive examples
A live gallery of usage patterns with source.
Live demo app
Open your own alignment, tree, and domain annotations.
R package (msaviewr)
ape, Biostrings, ggtree, treeio, and Shiny interop.
CLI
Batch InterProScan → GFF domain annotations.