| JBrowse |
| | | |—-|—-| | Available on platform | web + | | Has URL | http://jbrowse.org/install/ + , http://jbrowse.org + , http://twitter.com/usejbrowse + , http://github.com/GMOD/jbrowse + , http://jbrowse.org/demos + , http://icemangenome.net/%E2%80%8E + , http://genomesunzipped.org/jbrowse + , http://beetlebase.org + , http://www.medicinalgenomics.com/the-jane-ome/ + | | Has description | Browse the genome of Ötzi the ice man + , JBrowse is a genome browser with a fully d … JBrowse is a genome browser with a fully dynamic AJAX interface, being developed as the eventual successor to GBrowse. It is very fast and scales well to large datasets. JBrowse is javascript-based and does almost all of its work directly in the user’s web browser, with minimal requirements for the server. ===Features=== *Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. *Scales easily to multi-gigabase genomes and deep-coverage sequencing. *Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, VCF (with tabix), REST, and more. BAM, BigWig, and VCF data are displayed directly from the compressed binary file with no conversion needed. *Very light server resource requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance.ets from a single low-cost cloud instance. + | | Has development status | active + | | Has input format | [[GFF3]] + , BED + , FASTA + , WIG + , BedGraph + , Bio::DB::* + , UCSC + , Wiggle + , BigWig + , BAM + | | Has licence | [http://opensource.org/licenses/LGPL-3.0 LGPL] + , [http://opensource.org/licenses/Artistic-2.0 Artistic License 2.0] + | | Has logo | JBrowseLogo.png + | | Has software maturity status | mature + | | Has support status | active + | | Has title | JBrowse demos + , Ice Man Genome + , Genomes Unzipped: Public Personal Genomics + , BeetleBase + , The Jane-Ome, medicinal marijuana project + | | Has topic | JBrowse + | | Is open source | Yes + | | Link type | download + , social media + , website + , source code + , demo server + , wild URL + | | Release date | 2008 + | | Tool functionality or classification | Genome visualization + | | Written in language | Javascript + , Perl + | | Has queryThis property is a special property in this wiki. | JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + | | Categories | JBrowse + , GMOD Components + , AJAX + , GMOD Component + , SemanticLink + | | Modification dateThis property is a special property in this wiki. | 15 April 2016 19:18:52 + | | Has subobjectThis property is a special property in this wiki. | JBrowse#http://jbrowse.org/install/ + , JBrowse#http://jbrowse.org + , JBrowse#http://twitter.com/usejbrowse + , JBrowse#http://github.com/GMOD/jbrowse + , JBrowse#http://jbrowse.org/demos + , JBrowse#http://icemangenome.net/ + , JBrowse#http://genomesunzipped.org/jbrowse + , JBrowse#http://beetlebase.org + , JBrowse#http://www.medicinalgenomics.com/the-jane-ome/ + |
| hide properties that link here |
| | | |—-|—-| | GMOD Malaysia 2014/JBrowse Tutorial + , JBrowse + , JBrowse Tutorial 2010 + , JBrowse Tutorial 2013 + , JBrowse Tutorial PAG 2015 + , JBrowse Tutorial PAG 2016 + , JBrowse Tutorial PAG 2017 + , JBrowse Tutorial PAG 2018 + , JBrowse Tutorial PAG 2019 + , JBrowse Tutorial PAG 2020 + , JBrowse Tutorial Programming for Biology 2014 + , JBrowse Tutorial Programming for Biology 2015 + , JBrowse Tutorial Programming for Biology 2016 + | Has topic | | InterMine + , WebApollo + , WebApollo2 + | Interacts with | | JBrowseDev/Installation + , JBrowseDev/Main + , Jbrowse + | redirect page |
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