GMOD
Next Generation Sequencing
(Redirected from NGS
This page is under
construction. Eventually it will be a hub for all information in the
GMOD web site related to next generation sequencing.
Presentations & Posters
| Title | Where | Content | |—-|—-|—-| | GBrowse NGS Tutorial | at the Bioinformatics Australia 2009 GMOD Workshop, Melbourne, Australia, October 28-30, 2009 | Step by step tutorial on configuring GBrowse 2 to visualize NGS data using the SAMtools GBrowse adaptor, Bio::DB::Sam. This includes a VMware image to work with. | | GBrowse and Next Generation Sequencing Data | at Genome Informatics, Cold Spring Harbor, New York, USA, October 27-30, 2009 | Shows how to display NGS data in GBrowse 2, and in GBrowse 1.70. | | Quest for Standard: Sequence alignment/map format (SAM) and SAMtools | at August 2009 GMOD Meeting, Oxford, UK, August 6-7, 2009 | An overview of SAMtools, a platform agnostic set of programs and file formats for efficiently storing and retrieving short read data. | | Visualising NGS Data in GBrowse 2 | | Describes how to use GBrowse, the Bio::DB::Sam adaptor, and SAMtools to visualize next generation sequence data for whole genome resequencing data. | | Seeing the forest and the trees: visualizing next generation sequence data | at Next Generation Genome Analysis in Non-Model Organisms - An AGA Special Event, University of Connecticut, June 11-13, 2009 | Using GBrowse to visualize next generation sequence data for whole genome resequencing of related strains, and population genetics, followed by an overview of GMOD. | | Using GMOD for evolutionary genomics and next generation sequence data | at the Database tools for evolutionary genomics workshop at SMBE 2009, University of Iowa, June 3-7. | An overview of GMOD and a detailed discussion using GBrowse to visualize next generation sequence data using the Bio-SamTools SAMtools GBrowse adaptor. | | Visualising and Integrating Next Generation Sequence Data using GMOD | at Evolutionary Genetics - The impact of Next generation sequencing technologies in Lutherstadt-Wittenberg, Germany, April 2-4, 2009. | Discusses visualizing NGS data in GBrowse, using pre-SAMtools technologies. Has discussion on if displaying individual reads is useful. | | Managing Next Generation Sequence Data with GMOD | Poster at Plant and Animal Genome (PAG 2009), San Diego, CA, January 10-14, 2009 | Using GBrowse for next generation sequence data and population genetics. |