GMOD
PAG 2009
GMOD once again had a strong presence at the Plant and Animal Genome Conference (PAG 2009). PAG was also immediately before the January 2009 GMOD Meeting and many GMOD members attended both meetings.
There were be many, many workshops, computer demos, and posters, either about or using GMOD Components. This page lists only those items that mentioned GMOD Components in their abstracts.
About GMOD Components
| Day | Track | Time | Title & Author | Components |
|---|---|---|---|---|
| Sunday Jan 11 |
Database Resources at the EBI Workshop | 8:10-9:15 | Genome Resources at the EBI: Ensembl and Ensembl Genomes, Bert Overduin, Ensembl Team, Ensembl Genomes Team | BioMart |
| Computer & Training Workshop | 1:15-3:25 | The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse, Scott Cain | GBrowse | |
| Monday Jan 12 |
EVEN Numbered Poster Session | 10:00-11:30 | See below for a list of relevant posters. | |
| Computer Demo | 1:10-1:30 | EcoliWiki and GONUTS: Wiki-Based Systems for Community Annotation, Jim Hu, et al. | TableEdit | |
| ODD Numbered Poster Session | 3:00-4:30 | See below for a list of relevant posters. | ||
| Wednesday Jan 14 |
Computer & Training Workshop | 10:20-12:30 | Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your syntenic data with GBrowse_syn, Sheldon McKay, Scott Cain, and Dave Clements | GBrowse_syn |
Projects Using GMOD Components
| Day | Track | Time | Title & Author | Components |
|---|---|---|---|---|
| Saturday Jan 10 |
Brassicas Workshop | 11:20-11:40 | Annotation And Data Mining For The Brassica rapa Genome Sequencing Project, Martin Trick, et al. | GBrowse |
| Aquaculture Workshop | 4:20-4:40 | A Review Of The Marine Genomics Project, A Web-Based Genomic And Transcriptional Database, Stephen P Ficklin, et al. | Chado, GBrowse, Tripal | |
| Sunday Jan 11 |
Large Insert DNA Libraries Workshop | 8:25-8:45 | Use Of The Soybean Physical Map Derived Minimum Tile For BIBAC Plant Transformations Encompassing The Entire Genome, David A Lightfoot | GBrowse |
| Forest Trees workshop | 2:15-2:30 | Genomic Tool Development For The Fagaceae, Margaret E. Staton, et al. | Chado | |
| Computer Demo | 4:50-5:10 | The Rice Annotation Project Database (RAP-DB): Introduction to the Comparative Analysis between Rice and Other Plant Species, Hiroaki Sakai, et al. | GBrowse | |
| Monday Jan 12 |
EVEN Numbered Poster Session | 10:00-11:30 | See below for a list of relevant posters. | |
| Computer Demo | 1:30-1:50 | CottonDB: A Resource for Cotton Genome Research, Jing Yu, et al. | CMap | |
| 1:50-2:10 | Updates to SoyGD: Genome Sequence Search Tools and a Predicted Interactome, David Lightfoot, et al. | GBrowse | ||
| 2:10-2:30 | The Legume Information System (LIS): An Integrated, Dynamic Comparative Legume Information Resource, Gregory May et al. | CMap | ||
| 2:10-2:30 | The MaizeGDB Genome Browser, Taner Sen et al. | GBrowse | ||
| 2:30-2:50 | TreeGenes: A Forest Tree Genome Database, Jill Wegrzyn et al. | CMap | ||
| Plant Transgene Genetics Workshop | 2:40-3:00 | Use Of pCLD04541 Large Insert Clones And A Minimum Tile Path For Plant Transformations Encompassing The Entire Soybean Genome, David A Lightfoot, Hidayat Ullah | GBrowse | |
| ODD Numbered Poster Session | 3:00-4:30 | See below for a list of relevant posters. | ||
| Tuesday Jan 13 |
Computer & Training Workshop | 3:50-6:00 | Using Gramene: A Genomics and Genetics Resource for Rice and other Grasses., Claire Hebbard, and Immanuel Yap | CMap |
| Wednesday Jan 14 |
Computer Demo | 2:20-2:40 | Structural and Functional Annotation of Wheat and Barley Genome Sequences with TriAnnot Pipeline, Philippe Leroy et al. | Apollo (under consideration), GBrowse |
| 2:40-3:00 | GnpIS, The Plant Information System of INRA URGI Bioinformatic Platform, Michael Alaux, Delphine Steinbach et al. | Apollo, BioMart, Chado, CMap, GBrowse |
Posters
All poster sessions are on Monday, January 12.