GMOD
GMOD in the Sequencing Center
Sequencing centers have tremendous bioinformatics needs that GMOD can help address. Attend this Satellite Meeting to find out what other sequencing centers are doing with GMOD, and how GMOD can help you help your researchers.
Organizers
- Chris Hemmerich - Biological Database Unit Leader, and Project Lead for ISGA at the Center for Genomics and Bioinformatics (CGB), Indiana University (which is also the home of WebGBrowse).
- Dave Clements - Galaxy project, Emory University.
Topics
Discussion topics will be determined by Satellite Participants. Suggestions are listed here. If you have something you want to discuss, please add it here.
Suggested Topics
- Using tools like Ergatis, MAKER and Galaxy to help run a sequencing center.
- Using tools like ISGA, WebGBrowse, and Galaxy to enable your researchers to do bioinformatics without a bioinformatician.
- Providing your clients with a more finished product. Provide your clients with a genome server in a box using technology like VMware and tools such as GBrowse, JBrowse, MAKER, Apollo.
- ???
Participants
Add your name below if you are interested in attending the satellite. This satellite, like all Satellite Meetings at GMOD Americas 2011, is free and open to anyone.
| Participant | Comments | |
|---|---|---|
| Chris Hemmerich | chemmeri ‘at’ cgb dot indiana dpt edu | Organizer. CGB is a sequencing center that uses and develops GMOD tools. |
| Dave Clements | clements@nescent.org | Organizer. Galaxy Project Community Liaison. Galaxy includes support for sequencing center sample tracking, and can also be a useful platform for your clients to analyze their data and preserve their workflows. |
| Olen Sluder | olen AT acm DOT org | Texas Biomedical Research Institute |
| Surya Saha | ss2489 at cornell edu | Cornell University |
| Zhanji Liu | Delaware State | |
| Daniel Quest | ORNL | |
| Gary Xie | LANL | |
| Victor Ruotti | Wisconsin | |
| Joe Hornton | GSK | |
| Madhavan Ganesh | UC Berkeley | |
| Kashi Ravenna | University of North Texas |
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