Difference between revisions of "Template:GMODComponents"

From GMOD
Jump to: navigation, search
(Added Tool Integration header with a link to the new Galaxy page.)
(added comm. annot: table edit; changed to multi-col list)
Line 1: Line 1:
{| border="0" cellspacing="0" width=70% align="center"
+
<!-- Multi-column list is much easier to edit than  wikitable ;
|-
+
    pipe starts new column-->
|'''Comparative Genomics Visualization'''
+
{|width=80% valign="top" align="center"
| '''Genome Visualization & Editing'''
+
|'''Community Visualization'''
+
|-
+
|[[CMap]]
+
|[[Apollo]]
+
| [[Community]]
+
|-
+
|[[SynView]]
+
| [[Flash GViewer]]
+
| '''Workflow Management'''
+
|-
+
|[[SynBrowse]]
+
| [[GBrowse]]
+
|[[Citrina]]
+
|-
+
|[[Sybil]]
+
| [[javaSEAN]]
+
| [[TIGR-Workflow_/_Ergatis|Ergatis]]
+
|-
+
|'''Database tools'''
+
| [[GMODWeb]]
+
| '''Utilities'''
+
|-
+
|[[Argos]]
+
| [[Restriction Graphic Viewer]]
+
| [[org.bdgp]]
+
|-
+
|[[BioMart]]
+
|'''Literature Tools'''
+
|[[GMODWeb]]
+
|-
+
|[[GenoGrid]]
+
| [[PubSearch]]
+
|'''Middleware'''
+
|-
+
|[[Genome Directory System (GDS)]]
+
| [[PubFetch]]
+
|[[Modware]]
+
|-
+
|[[GMODTools]]
+
| [[Textpresso]]
+
|[[Chado::AutoDBI]]
+
|-
+
|[[LuceGene]]
+
| '''Molecular Pathway Visualization'''
+
| '''Tool Integration'''
+
|-
+
|[[XORT]]
+
| [[Pathway_Tools|Pathway Tools]]
+
|[[Galaxy]]
+
|-
+
|'''Gene Expression Visualization'''
+
| '''Ontology Visualization'''
+
 
|
 
|
|-
+
'''Comparative Genomics Visualization'''
|[[Caryoscope]]
+
*[[CMap]]
| [[GO_Graphic_Viewer|Go Graphic Viewer]]
+
*[[SynView]]
 +
*[[SynBrowse]]
 +
*[[Sybil]]
 +
 
 +
'''Database tools'''
 +
*[[Argos]]
 +
*[[BioMart]]
 +
*[[GenoGrid]]
 +
*[[Genome Directory System (GDS)]]
 +
*[[GMODTools]]
 +
*[[LuceGene]]
 +
*[[XORT]]
 +
 
 +
'''Gene Expression Visualization'''
 +
*[[Caryoscope]]
 +
*[[GeneXplorer]]
 +
*[[Java TreeView]]
 
|
 
|
|-
+
 
|[[GeneXplorer]]
+
'''Genome Visualization & Editing'''
| '''Sequence Alignment'''
+
*[[Apollo]]
 +
*[[Flash GViewer]]
 +
*[[GBrowse]]
 +
*[[GMODWeb]]
 +
*[[javaSEAN]]
 +
*[[Restriction Graphic Viewer]]
 +
 
 +
'''Literature Tools'''
 +
* [[PubSearch]]
 +
* [[PubFetch]]
 +
* [[Textpresso]]
 +
 
 +
'''Molecular Pathway Visualization'''
 +
* [[Pathway_Tools|Pathway Tools]]
 +
 
 +
'''Ontology Visualization'''
 +
* [[GO_Graphic_Viewer|Go Graphic Viewer]]
 +
 
 +
'''Sequence Alignment'''
 +
*[[BLAST_Graphic_Viewer|Blast Graphic]]
 
|
 
|
|-
+
'''Community Annotation'''
|[[Java TreeView]]
+
*Wiki [[Table Editor]]
| [[BLAST_Graphic_Viewer|Blast Graphic]]
+
*[[Community]] addressbook
|
+
 
|-
+
'''Workflow Management'''
 +
*[[Citrina]]
 +
*[[TIGR-Workflow_/_Ergatis|Ergatis]]
 +
 
 +
'''Middleware'''
 +
*[[Modware]]
 +
*[[Chado::AutoDBI]]
 +
 
 +
'''Tool Integration'''
 +
*[[Galaxy]]
 +
 
 +
'''Utilities'''
 +
*[[org.bdgp]]
 +
 
 
|}
 
|}

Revision as of 04:25, 24 July 2007

Comparative Genomics Visualization

Database tools

Gene Expression Visualization

Genome Visualization & Editing

Literature Tools

Molecular Pathway Visualization

Ontology Visualization

Sequence Alignment

Community Annotation

Workflow Management

Middleware

Tool Integration

Utilities