GMOD Components

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By Function

GMOD is a collection of software applications (components) aimed at providing the functionality that is needed by all organism databases. The table below classifies GMOD components according to their functional categories.

See Category:External for software mentioned in the GMOD web site (and possibly used by GMOD components) that is not part of the GMOD project.

Read the requirements for software to be considered a GMOD component.


Community Annotation

Apollo

BioDIG

Canto

WebApollo

Wiki TableEdit


Comparative Genome Visualization

CMap

GBrowse_syn

Pathway Tools

SynView

Sybil


Database schema

Chado


Database tools

Argos

BioMart

Genome grid

GMODTools

InterMine

LuceGene

XORT


Gene Expression Visualization

Caryoscope

GeneXplorer

Pathway Tools


Genome Annotation

Apollo

DIYA

MAKER

SOBA

WebApollo


Genome Visualization & Editing

Apollo

Flash GViewer

GBrowse

JBrowse

Pathway Tools

WebGBrowse

WebApollo


Literature and Curation Tools

BioDIG

Canto

Textpresso

Molecular Pathway Visualization

Pathway Tools


Ontology Visualization

Go Graphic Viewer


Workflow Management

DIYA

Ergatis

ISGA


Middleware

Modware

Chado::AutoDBI

Bio::Chado::Schema


Tool Integration

Galaxy


Sequence Alignment

Blast Graphic


Website front end for Chado DB

Tripal