| GO::TermFinder |
| | | |—-|—-| | Available on platform | linux + , os x + , unix + , web + | | Date published | 2004 + | | Has DOI | 10.1093/bioinformatics/bth456 + | | Has PMCID | PMC3037731 + | | Has PMID | 15297299 + | | Has URL | http://search.cpan.org/dist/GO-TermFinder/ + , http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder + | | Has author | Boyle EI + , Weng S + , Gollub J + , Jin H + , Botstein D + , Cherry JM + , Sherlock G + | | Has description | GO TermFinder takes a list of genes as inp … GO TermFinder takes a list of genes as input, and determines whether there are enriched GO terms for that list. These modules provide an object oriented set of libraries for dealing with files produced by the [http://www.geneontology.org/ Gene Ontology project]. In particular, the GO TermFinder object allows a client program to provide a list of genes, from which it will determine p-values for the annotation associated with that list of genes. It does this using the hypergeometric distribution. In addition, a corrected p-value is calculated, to correct for multiple hypothesis testing. This distribution also contains a version of Shuai Weng’s GO-View module (and associated classes), such that you can graphically display the output of the GO TermFinder. Some simple clients of these modules are provided in the examples directory of the download.in the examples directory of the download. + | | Has development status | maintenance + | | Has input format | gene list + | | Has publication details | Bioinformatics (Oxford, England) 20: 3710-5 + | | Has software maturity status | mature + | | Has support status | active + | | Has title | GO::TermFinder–open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. + | | Has topic | GO::TermFinder + | | Is open source | Yes + | | Link type | download + , public server + | | Published in | Bioinformatics (Oxford, England) + | | Release date | 2003 + | | Tool functionality or classification | Ontology Visualization + , Gene list analysis + | | Written in language | Perl + | | Has queryThis property is a special property in this wiki. | GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + , GO::TermFinder + | | Has improper value forThis property is a special property in this wiki. | Available on platform + , Has title + , Has description + | | Categories | GMOD Components + , GMOD Component + , SemanticLink + | | Modification dateThis property is a special property in this wiki. | 4 December 2013 02:20:44 + | | Has subobjectThis property is a special property in this wiki. | GO::TermFinder#http://search.cpan.org/dist/GO-TermFinder/ + , GO::TermFinder#http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder + |
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