GMOD
PAG 2013
GMOD was out in force at the Plant and Animal Genomes (PAG) conference in January
- In addition to the day-long workshop on GMOD tools, there were also posters and presentations from many GMOD users, as well as from developers of GMOD tools.
Contents
Core GMOD Content
There were a number of items focussed on the tools and services that GMOD provides. These were:
| Date | Time | ID | Session | Type |
| Sun. Jan. 13 | 1:30 pm - 3:40 pm | 1530 | Generic Genome Browser | Workshop |
| Mon. Jan. 14 | 10:00 am - 11:30 am | P0984 | Using GMOD to Annotate and Distribute Data in the Cloud | Poster |
| Mon. Jan. 14 | 3:00 pm - 4:30 pm | P0967 | WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation | Poster |
| Wed. Jan. 16 | 10:20 am - 5:00 pm | 1537 | GMOD | Workshop |
A printable PDF of this timetable is also available.
All Day GMOD Workshop
The GMOD workshop on Wednesday January 16th was be held in the Golden West room from 10:20 until 5pm, and had the follow schedule:
| 10:30 AM - 11:10 AM | GMOD: A User’s Perspective |
| 11:10 AM - 11:50 AM | MAKER |
| 11:50 AM - 12:30 PM | Tripal: a Toolkit for Construction of Genomic and Genetic Websites Using Chado and Drupal |
| 1:30 PM - 2:10 PM | GBrowse_syn: Using the Generic Synteny Browser |
| 2:10 PM - 2:50 PM | JBrowse: A Next-Generation Genome Browser |
| 3:05 PM - 3:45 PM | WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation |
| 3:45 PM - 4:25 PM | Galaxy Update 2013 |
GMOD Consumers and Providers
There were also be many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:
| Date | Time | ID | Session title | Type | |—-|—-|—-|—-|—-| | 12 Jan. (Sat.) | 1:30 pm - 3:40 pm | 1500 | Citrus Genome | Workshops | | 12 Jan. (Sat.) | 1:30 pm - 3:40 pm | 1508 | Cool Season Legumes | Workshops | | 12 Jan. (Sat.) | 1:30 pm - 3:40 pm | 1549 | Maize | Workshops | | 12 Jan. (Sat.) | 3:50 pm - 6:00 pm | 1488 | Bioenergy Grass Genomics | Workshops | | 12 Jan. (Sat.) | 3:50 pm - 6:00 pm | 1531 | The Genetic Landscape of Wheat Rusts | Workshops | | 12 Jan. (Sat.) | 3:50 pm - 6:00 pm | 1659 | Next Generation Genome Annotation and Analysis | Workshops | | 12 Jan. (Sat.) | 8:00 am - 6:00 pm | 1570 | Poultry 1 | Workshops | | 12 Jan. (Sat.) | 8:00 am - 10:10 am | 1596 | Applications of Ontologies to Plant and Animal Genomics | Workshops | | 12 Jan. (Sat.) | 8:00 am - 12:30 pm | 1497 | Cattle/Swine | Workshops | | 12 Jan. (Sat.) | 8:00 am - 12:30 pm | 1560 | Pine Genome Reference Sequence | Workshops | | 12 Jan. (Sat.) | 10:20 am - 12:30 pm | 1484 | Arthropod Genomics | Workshops | | 12 Jan. (Sat.) | 10:20 am - 12:30 pm | 1691 | Managing Crop Phenotype Data | Workshops | | 12 Jan. (Sat.) | 10:20 am - 12:30 pm | 1767 | DNA Subway: Genomics, DNA Barcoding, and RNA-Seq - Bringing Cutting-Edge Biology into the Classroom | Workshops | | | | | | | | 13 Jan. (Sun.) | 3:50 pm - 6:00 pm | 1509 | Cotton Genome Initiative | Workshops | | 13 Jan. (Sun.) | 3:50 pm - 6:00 pm | 1700 | Computer Demos 2 - Software | Computer Demonstrations | | 13 Jan. (Sun.) | 8:00 am - 12:30 pm | 1514 | Genome annotation resources at the EBI | Workshops | | 13 Jan. (Sun.) | 8:00 am - 12:30 pm | 1588 | Sugar Cane (ICSB) | Workshops | | | | | | | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0055 | Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0059 | Phylogenetic Analyses of Citrus LRR-RLKs | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0223 | Genetic Variation Across Australian Bread Wheat Varieties | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0357 | QTLs and Comparative Genomics Highlight Candidate Genes for Important Cowpea Traits | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0409 | Status of the Draft Potato Ontology | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0621 | Whole-Genome Genotyping for Detecting Mutations in the Genes that are Directly Responsible for the Trait Variation | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0763 | Analysis of B. taurus and B. indicus Admixture in Uganda as Revealed by the Illumina BovineSNP50 Genotyping BeadChip. | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0953 | CottonGen: An Integrated Web-Database for Cotton Genomics, Genetics and Breeding Research | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0957 | Annotation of Livestock and Aquaculture species in Ensembl | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0961 | Hymenoptera Genome Database: Resources for Annotating and Comparing Hymenopteran Insect Genomes | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P0985 | GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation | Posters | | 14 Jan. (Mon.) | 3:00 pm - 4:30 pm | P1017 | Embrapa Bioinformatic Multi-user Laboratory | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0044 | Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0058 | Genomic Analysis of the Upstream Sequences of Limonene Synthase Genes in Sweet Orange | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0132 | Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parentage Verification Across Multiple Bos taurus and Bos indicus breeds | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0326 | Using SoyBase Tools to Identify Genes Potentially Involved in Quantitative Traits: the Soybean bZIP1 Transcription Factor and Water Use Efficiency | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0342 | Gene Expression Atlas for Common Bean | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0358 | Modern Breeding of Cowpea (Vigna unguiculata L. Walp.) in sub-Saharan Africa | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0458 | Genomics Resources for North American Hardwoods | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0504 | Genome Annotation and Comparison of Two Pacific Rockfishes Differing in Longevity | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0928 | A Model Organism Database for Phytozome | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0934 | GnpSeq NGS: a New Tool to Manage NGS Data in URGI’s Information System (GnpIS) | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0948 | Bioinformatic Solutions in Forest Genomics: Accessing the TreeGenes Database | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0952 | The Legume Information System 2013 | Posters | | 14 Jan. (Mon.) | 10:00 am - 11:30 am | P0954 | Liverwort Genome Analysis using DDBJ Pipeline and Construction of the Genome Annotation Database | Posters | | 14 Jan. (Mon.) | 12:50 pm - 3:00 pm | 1701 | Computer Demos 3 - Crop Databases | Computer Demonstrations | | | | | | | | 15 Jan. (Tue.) | 3:50 pm - 6:00 pm | 1495 | Cassava Genomics | Workshops |
PAG Poster Parade
Scott took photos of most of the posters containing GMOD content or screenshots. Check out his gallery on Flickr.