GMOD
GO::TermFinder
Status
- Mature release
- Development: maintenance
- Support: active
Resources
Facts about “TermFinder”RDF feed
| | | |—-|—-| | Available on platform | linux +, os x +, unix + and web + | | Has URL | http://search.cpan.org/dist/GO-TermFinder/ + and http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder + | | Has description | GO TermFinder takes a list of genes as inp … GO TermFinder takes a list of genes as input, and determines whether there are enriched GO terms for that list. These modules provide an object oriented set of libraries for dealing with files produced by the Gene Ontology project. In particular, the GO TermFinder object allows a client program to provide a list of genes, from which it will determine p-values for the annotation associated with that list of genes. It does this using the hypergeometric distribution. In addition, a corrected p-value is calculated, to correct for multiple hypothesis testing. This distribution also contains a version of Shuai Weng’s GO-View module (and associated classes), such that you can graphically display the output of the GO TermFinder. Some simple clients of these modules are provided in the examples directory of the download.in the examples directory of the download. | | Has development status | maintenance + | | Has input format | gene list + | | Has software maturity status | mature + | | Has support status | active + | | Has topic | GO::TermFinder + | | Is open source | Yes + | | Link type | download + and public server + | | Release date | 2003 + | | Tool functionality or classification | Ontology Visualization + and Gene list analysis + | | Written in language | Perl + | | Has subobjectThis property is a special property in this wiki. | GO::TermFinder#http://search.cpan.org/dist/GO-TermFinder/ + and GO::TermFinder#http://go.princeton.edu/cgi-bin/GOTermFinder/GOTermFinder + |