| name = WebApollo | full_name = | status = mature
| dev = active | support = active | type = Community annotation |
platform = web | logo = WebApolloLogo.png | home = | about =
WebApollo is a browser-based tool for visualisation and editing of
sequence annotations. It is designed for distributed community
annotation efforts, where numerous people may be working on the same
sequences in geographically different locations; real-time updating
keeps all users in sync during the editing process.
The features of WebApollo include:
- History tracking, including browsing of an annotation’s edit history
and full undo/redo functions
- Real time updating: edits in one client are instantly pushed to all
other clients
- Convenient management of user login, authentication, and edit
permissions
- Two-stage curation process: edit within a temporary workspace, then
publish to a curated database
- Ability to add comments, either chosen from a pre-defined set of
comments or as freeform text.
- Ability to add dbxrefs [database crossreferences] – e.g. for GO
functional annotation
- Can set start of translation for a transcript or let server determine
automatically
- Flagging of non-canonical splice sites in curated annotations
- Edge matching to selected feature: matching edges across annotations
and evidence tracks are highlighted
- Option to color transcript CDS by reading frame
- Loading of data directly from GFF3, BigWig, and BAM files, both
remotely and from user’s local machine.
- Configurable heat map rendering of BigWig data
- Per-session track configuration to set annotation colors, height, and
other properties
- Export of annotation tracks as GFF3 and optionally other formats
- Search by sequence residues using server-side interface to BLAT or
other sequence search programs
The public demo can be accessed at:
http://genomearchitect.org/WebApolloDemo (Bos
taurus genome).
| screenshot = | public_server = | dl = | dl_url =
http://genomearchitect.org/webapollo/releases/ |
dl_src =
JBrowse client source on github
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