GMOD

Sample Chado gene report

This is a sample Chado gene page output for the Drosophila gene toy.

chado_dmel_r5_1=# select field,value from v_genepage2 where feature_id = 3198220;

field value
Name toy
uniquename FBgn0019650
seqlen 16576
type gene
organism Dmel
Synonym_2nd Toy
Synonym_2nd l(4)102CDg
Synonym_2nd l(4)8
Synonym_2nd l(4)8
Synonym twin of eyeless
Synonym_2nd l(4)8
Synonym_2nd l(4)8
Synonym_2nd l(4)8
Synonym_2nd l(4)102CDg
Synonym_2nd lethal(4)102CDg
Synonym_2nd l(4)8
Synonym_2nd l(4)102CDg
Synonym_2nd CG11186
Synonym toy
Dbxref FlyBase:FBgn0019650
Dbxref 2 FlyBase:FBan0011186
Dbxref 2 FlyBase:FBgn0019650
Dbxref obsolete GB:CG11186
Dbxref 2 FlyBase Annotation IDs:CG11186
Dbxref obsolete FlyBase:FBgn0004523
Dbxref 2 GB:AC010838
Dbxref 2 GB:AE003846
Dbxref 2 GB_protein:AAF59395
Dbxref 2 GB:AF134350
Dbxref 2 GB_protein:AAD31712
Dbxref 2 GB:AF433801
Dbxref 2 GB:AF433802
Dbxref 2 GB:AF433803
Dbxref 2 GB:AF433804
Dbxref 2 GB:AF433805
Dbxref 2 GB:AF433806
Dbxref 2 GB:AF433807
Dbxref 2 GB:AF433808
Dbxref 2 GB:AF433809
Dbxref 2 GB:AF433810
Dbxref 2 GB:AF433811
Dbxref 2 GB:AF433812
Dbxref 2 GB:AF433813
Dbxref 2 GB:AF433814
Dbxref 2 GB:AF433815
Dbxref 2 GB:AF433816
Dbxref 2 GB:AF433817
Dbxref 2 GB:AF433818
Dbxref 2 GB:AF433819
Dbxref 2 GB:AF433820
Dbxref 2 GB:AF433821
Dbxref 2 GB:AF433822
Dbxref 2 GB:AF433823
Dbxref 2 GB:AF433824
Dbxref 2 GB:AF433825
Dbxref 2 GB:AF433826
Dbxref 2 GB:AF433827
Dbxref 2 GB:AF433828
Dbxref 2 GB:AF433829
Dbxref 2 GB:AF433830
Dbxref 2 GB:AF433831
Dbxref 2 GB:AF461436
Dbxref 2 GB:AF461437
Dbxref 2 GB:AF461438
Dbxref 2 GB:AF461439
Dbxref 2 GB:AF461440
Dbxref 2 GB:AF461441
Dbxref 2 GB:AF461442
Dbxref 2 GB:AF461443
Dbxref 2 GB:AF461444
Dbxref 2 GB:AF461445
Dbxref 2 GB:AI238414
Dbxref 2 GB:AI405930
Dbxref 2 GB:AI513309
Dbxref 2 GB:AW941874
Dbxref 2 GB:AY051487
Dbxref 2 GB_protein:AAK92911
Dbxref 2 GB:DQ017442
Dbxref 2 GB_protein:AAY82224
Dbxref 2 GB:DQ017443
Dbxref 2 GB_protein:AAY82225
Dbxref 2 UniProt/TrEMBL:Q3YNB0
Dbxref 2 UniProt/TrEMBL:Q9V490
Dbxref 2 UniProt/TrEMBL:Q9XZC2
Dbxref 2 INTERPRO:IPR000047
Dbxref 2 INTERPRO:IPR001356
Dbxref 2 INTERPRO:IPR001523
Dbxref 2 INTERPRO:IPR007104
Dbxref 2 INTERPRO:IPR009057
Dbxref 2 INTERPRO:IPR011991
Dbxref 2 INTERPRO:IPR012287
Dbxref 2 bdgpinsituexpr:toy
Dbxref 2 dedb:13651
Dbxref 2 drsc:FBgn0019650
Dbxref 2 flight:FBgn0019650
Dbxref 2 flyatlas:FBgn0019650
Dbxref 2 flyexpress:FBgn0019650
Dbxref 2 flygrid:68659
Dbxref 2 flymine:FBgn0019650
Dbxref 2 geo:FBgn0019650
Dbxref 2 hdri:FBgn0019650
Dbxref 2 hybrigenics:521451
Dbxref 2 kwexpression:FBgn0019650
Dbxref 2 orthologs:ensAG:ENSANGG00000014938
Dbxref 2 orthologs:ensAM:ENSAPMG00000000393
Dbxref 2 orthologs:ensCF:ENSCAFG00000007491
Dbxref 2 orthologs:ensGG:ENSGALG00000012123
Dbxref 2 orthologs:ensHS:ENSG00000007372
Dbxref 2 orthologs:ensMM:ENSMUSG00000027168
Dbxref 2 orthologs:ensRN:ENSRNOG00000004410
Dbxref 2 orthologs:ensTN:GSTENG00025814001
Dbxref 2 panther:FBgn0019650
SO nuclear_gene; 0000087
SO protein_coding_gene; 0000010
molecular_function transcription factor activity; 0003700
molecular_function specific RNA polymerase II transcription; 0003704
biological_process ectoderm development; 0007398
biological_process nervous system development; 0007399
biological_process eye development (sensu Endopterygota); 0007456
biological_process endoderm development; 0007492
biological_process mesoderm development; 0007498
biological_process muscle development; 0007517
biological_process cell proliferation; 0008283
biological_process eye-antennal disc development; 0035214
molecular_function sequence-specific DNA binding; 0043565
biological_process regulation of transcription; 0045449
cellular_component nucleus; 0005634
biological_process regulation of transcription from RNA pol; 0006357
sp_status curator examined, unresolved
gbunit AE014135
cyto_range 102D1-102D1
map 102F5-102F5
problem true
molecular_info A single amino acid substitution in the @ey@ protein is able to change the DNA-binding a ffinity of its paired domain to that of @toy@.
cyto_loc_comment Maps close to @ey@.
genetic_location 4-
genetic_location 4-0
merge_source Source for merge of: l(4)102CDg toy
gain_of_fn_species Gain of function effect when expressed in: Xlae
wild_type_role @toy@ acts upstream of @ey@ in the control of eye development. Despite the similarity in
structure and expression of @toy@ and @ey@, normal expression of @toy@ cannot compensate for the loss of @ey
@ function.
wild_type_role In the embryonic head, @so@ acts in parallel to @ey@ and @toy@.
wild_type_role @toy@ is crucial at the very beginning of eye-antennal development in the primordia of e ye-antennal discs. @toy@ also has parallel and partially redundant functions with @ey@.
recent_review FBrf0125060
recent_review FBrf0111566
recent_review FBrf0125309
recent_review FBrf0145168
recent_review FBrf0157326
promoted_gene_type protein_coding_gene
promoted_genetic_location 4-0
derived_computed_cyto 102D1-102D1; Limits computationally determined from genome sequence between @P{SUPor-P}A sator<up>KG05051</up>@&@P{SUPor-P}KG01424@ and @PBac{3HPy<up>+</up>}C024@
derived_experimental_cyto 102E1-102E1
derived_experimental_cyto 102E1-102E1; (determined by in situ hybridisation)
derived_experimental_cyto 102B6-102E10
derived_supporting_accessions AC010838

AE003846 AAF59395
AF134350 AAD31712
AF433801
AF433802
AF433803
AF433804
AF433805
AF433806
AF433807
AF433808
AF433809
AF433810
AF433811
AF433812
AF433813
AF433814
AF433815
AF433816
AF433817
AF433818
AF433819
AF433820
AF433821
AF433822
AF433823
AF433824
AF433825
AF433826
AF433827
AF433828
AF433829
AF433830
AF433831
AF461436
AF461437
AF461438
AF461439
AF461440
AF461441
AF461442
AF461443
AF461444
AF461445
AI134927
AI238414
AI405930
AI513309
AW941874
AY051487 AAK92911
BI357432
BI364401
BI579622
BI608091
BI608591
BI620168
BI629987
CG11186
CO177874
CO188773
CO196609
CO286530
CO290808
CO296398
CO298658
CO309028
CO317132
CO319894
CO320864
CO338232
CO341814
DQ017442 AAY82224
DQ017443 AAY82225

GH26083
derived_polypeptide_bodypart_expression_text Expression in procephalic neuroblasts stage 9-11: deuterocerebrum - d3, d6, d8; protocer ebrum - ad15, av1, cd1-7, cd9, cd11-14, cd17-21, cv6-9, pd1-20, pv2, pv3
derived_polypeptide_bodypart_expression_cv <as> immunolocalization <t> embryonic stage | stage 9-11 <a> procephal ic neurectoderm & embryonic antennal segment | restricted <p><s><c>
derived_polypeptide_bodypart_expression_cv <as> immunolocalization <t> embryonic stage | stage 9-11 <a> procephal ic neurectoderm & embryonic acron | restricted <p><s><c>
derived_polypeptide_bodypart_expression_cv <as> immunolocalization <t> embryonic stage | stage 9-11 <a> protocere bral neuroblast | subset <p><s><c>
derived_polypeptide_bodypart_expression_cv <as> immunolocalization <t> embryonic stage | stage 9-11 <a> deuteroce rebral neuroblast | subset <p><s><c>
derived_transcript_bodypart_expression_text Expression in procephalic neuroblasts stage 9-11: deuterocerebrum - d3, d6, d8; protocer ebrum - ad15, av1, cd1-7, cd9, cd11-14, cd17-21, cv6-9, pd1-20, pv2, pv3
derived_transcript_bodypart_expression_text Developmental northern blots show that this @FBgn0019650:toy@ transcript is highly expre ssed and can be detected throughout development.
derived_transcript_bodypart_expression_text Developmental northern blots show that this @FBgn0019650:toy@ transcript is a minor band and therefore lowly expressed and is first detected in larval extracts and persists in adults.
derived_transcript_bodypart_expression_text Developmental northern blots show that this @FBgn0019650:toy@ transcript is a minor band and therefore lowly expressed but can be detected throughout development.
derived_transcript_bodypart_expression_cv <as> in situ <t> embryonic stage | stage 9-11 <a> protocerebral neurob last | subset <p><s><c>
derived_transcript_bodypart_expression_cv <as> northern blot <t> embryonic stage-adult stage <a><p><s&g t;<c>
derived_transcript_bodypart_expression_cv <as> in situ <t> embryonic stage | stage 9-11 <a> procephalic neurecto derm & embryonic acron | restricted <p><s><c>
derived_transcript_bodypart_expression_cv <as> northern blot <t> embryonic stage-adult stage <a><p><s&g t;<c>
derived_transcript_bodypart_expression_cv <as> northern blot <t> larval stage-adult stage <a><p><s>& lt;c>
derived_transcript_bodypart_expression_cv <as> in situ <t> embryonic stage | stage 9-11 <a> deuterocerebral neur oblast | subset <p><s><c>
derived_transcript_bodypart_expression_cv <as> in situ <t> embryonic stage | stage 9-11 <a> procephalic neurecto derm & embryonic antennal segment | restricted <p><s><c>
derived_transcript_reported_sizes 3.8, 2.7, 2.4 (northern blot)
derived_stock_Bloomington 6257 @FBst0006257:y[1]; toy[hdl]/sv[spa-Cat]@
location 4:1010354..1026929 [+]

(173 rows)

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