GMOD

Pathway Tools/tool data

This page contains the data that populates the Pathway Tools page.

| name = Pathway Tools | full_name = | status = mature | dev = active | support = active | type = Community Annotation, Comparative Genome Visualization , Database schema, Database tools, Gene Expression Visualization, Genome Visualization & Editing, Molecular Pathway Visualization, Ontology Visualization | platform = linux, os x, unix, win|platform = linux, os x, unix, win|platform = linux, os x, unix, win | platform = web | logo = PathwayTools.png | home = http://bioinformatics.ai.sri.com/ptools/ | about = Pathway Tools is a comprehensive symbolic systems biology software system that supports several use cases in bioinformatics and systems biology:

Pathway Tools has four components:

| screenshot = | public_server = http://biocyc.org/ | dl = | dl_url = http://biocyc.org/download.shtml | dl_src = Source code is available on execution of software license. | dl_src_url = | dl_dev = | dl_dev_url = | getting_started_preamble = Start with an annotated genome in the form of a Genbank file; Pathway Tools will do the rest. | req = | install = | config = | doc = Documentation is available within the software distribution. For an overview of the tool, see Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology [1] | papers =

| presentations = | tutorials =

Pathway Tools slides
General information about Pathway Tools, including slides from tutorials and user guides

Upcoming Events
Pathway Tools tutorials and workshops

| wild_urls = There are a large number of PGDBs available via the BioCyc website, e.g. the E. coli PGDB, as well as a list of PGDBs hosted elsewhere. | mail =

       
  Mailing List Link Description Archive(s)
Pathway Tools ptools-users@ai.sri.com Pathway Tools users list. To subscribe to this list, send a request to ptools-support@ai.sri.com. None

| logo_info = | dev_ppl = Pathway Tools was developed by Peter D. Karp and coworkers at the Bioinformatics Research Group at SRI International. | dev_status = The Pathway Tools Developers’ Corner has updates and information on current and proposed Pathway Tools developments. | contact_email = Peter Karp | input = Genbank format; GFF | output = Genbank format; SBML; BioPAX | see_also = See the samples section of the BioCyc website for details of the types of data that are stored in a PGDB. | demo_server = | survey_link = Pathway_Tools |release date=1999
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