Version 1.1 of GMODTools has been released.
Version 1.1 adds these features and corrections:
- No chromosome/scaffold/golden_path files. This change is needed to
handle partially assembled genomes with many (1000s to 100,000s) of
scaffolds. Flag no_csomesplit=1 to use this (should become default).
- Gene Ontology association file, see go_association tags in
configurations
- Validate main variables in chado database: ${golden_path},
${seq_ontology}. This step, on now by default, checks that database
contains configured values. If failed, db is inspected for real
values.
- Miscellany bugs cured and configuration updates, e.g., tables/overview
now again active.
GMODTools is a Perl package that generates
Fasta, GFF, DNA and other bulk genome annotation files
from Chado databases.
Posted to the GMOD News on 2007/10/16
Category:
Navigation
Documentation