GMOD
ISMB/ECCB 2011
ISMB/ECCB 2011 will be held July 15-19 in Vienna Austria. Several other events, such at the Functional Genomics Data Society Meeting and RECOMB-BE will be held before and after ISMB.
GMOD will once again have a strong presence at these events.
Events, Talks, and Posters
Please add your items to this list as they are scheduled.
| Day | Time | Track | Title & Presenter/Organizer | Components | Slides / Poster |
|---|---|---|---|---|---|
| Fri-Sat 15-16 July |
8:30-18:00 | Satellites | BOSC: The 12th Annual Bioinformatics Open Source Conference | ||
| Enacting Taverna Workflows through Galaxy, Marco Roos | Galaxy | ||||
| InterMine - Using RESTful Webservices for Interoperability, Alex Kalderimis | InterMine | ||||
| BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins, Junjun Zhang | BioMart | ||||
| The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks | Galaxy | ||||
| WebApollo: A web-based sequence annotation editor for community annotation, Nomi Harris | WebApollo | ||||
| Enabling NGS Analysis with(out) the Infrastructure, Enis Afgan | Galaxy | ||||
| SADI for GMOD: Bringing Model Organism Data onto the Semantic Web, Ben Vandervalk | |||||
| What's new with GMOD, Scott Cain | GMOD Components | ||||
| Sunday 17 July |
10:45-12:40 | ISMB/ECCB Workshops | W1: Bioinformatics Core
Facilities.
Includes a talk by Brad Chapman on their use of Galaxy at the Harvard School of Public Health |
Galaxy | |
| Monday 18 July |
12:15-12:40 | ISMB/ECCB Tech Track | TT23: Enacting Taverna Workflows through Galaxy, Kostas Karasavvas, NBIC - LUMC | Galaxy | Abstract |
| 12:40-14:30 | ISMB/ECCB Poster Presentations, Odd | V7: SymD server: a platform for detecting internally symmetric protein structures, Chin-Hsien (Emily) Tai, et al., National Cancer Institute | Galaxy | ||
| J43: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts, Philipp Drewe, et al. Friedrich Miescher Laboratory of the Max Planck Society | Galaxy | ||||
| Tuesday 19 July |
10:45-11:10 | ISMB/ECCB Tech Track | TT37: NGS Best Practices through Galaxy: Cloud-based variant discovery with visual analytics, Daniel Blankenberg, Penn State University | Galaxy | Abstract |
| 12:15-12:40 | ISMB/ECCB Proceedings | PT40: From Sets to Graphs: Towards a Realistic Enrichment Analysis of Transcriptomic Systems, Ludwig Geistlinger, LMU München | Galaxy | ||
| 12:40-14:30 | ISMB/ECCB Poster Presentations, Even | Z04: CADDSuite: A flexible and open framework and workflow system for computer-aided drug design, Marcel Schumann and Marc Röttig, University of Tuebingen | Galaxy | ||
| 14:30-16:25 | Workshops | W6: Genomics for Non-Model Organisms, Dave Clements This Galaxy organized workshop features these talks: 14:30-14:55: Using RAD-seq for genomic and transcriptomic studies of non-model organisms, Julian Catchen, University of Oregon 15:00-15:25: Using RNA-seq for gene annotation, quantitation, and function in non-model organisms, Jeremy Goecks, Emory University 15:00-15:55: TBD 16:00-16:25: Repeatable plant pathology bioinformatic analysis: not everything is NGS data, Peter Cock, James Hutton Institute | Galaxy | ||
| 14:30-14:55 | ISMB/ECCB Tech Track | TT48: Oqtans: A Galaxy-integrated workflow for Quantitative Transcriptome Analysis from NGS data, Géraldine Jean and Sebastian J. Schultheiss, Friedrich Miescher Laboratory of Max Planck Society | Galaxy | Abstract | |
| 14:30-14:55 | ISMB/ECCB Tech Track | TT24: EMBOSS: New developments and extended data access, Peter Rice, European Bioinformatics Institute | Galaxy | Abstract | |
| 16:00-16:25 | ISMB/ECCB Tech Track | TT59: The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks, Emory University Note: we are trying to reschedule this to an earlier time. | Galaxy | Abstract | |