Build a synteny (PAF) track config spanning two assemblies — synteny_track • JBrowseR

Build a synteny (PAF) track config spanning two assemblies

synteny_track(
  uri,
  target_assembly,
  query_assembly,
  name = NULL,
  track_id = NULL,
  ...
)

Arguments

uri: URL to a .paf file.
target_assembly, query_assembly: The two assembly names (PAF target is the first assembly of a synteny_view()).
name: Track display name. Defaults to the file's base name.
track_id: Track id. Defaults to a slug of name.
...: Extra config merged onto the track.

Value

a track config list