NOTE: We are working on migrating this site away from MediaWiki, so editing pages will be disabled for now.
Difference between revisions of "Visualization"
From GMOD
m (→Genome Visualization) |
m (→Comparative Genomics Visualization) |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 11: | Line 11: | ||
* [[GBrowse]] | * [[GBrowse]] | ||
* [[JBrowse]] | * [[JBrowse]] | ||
| − | |||
== Comparative Genomics Visualization == | == Comparative Genomics Visualization == | ||
| Line 20: | Line 19: | ||
* [[GBrowse_syn]] | * [[GBrowse_syn]] | ||
* [[Sybil]] | * [[Sybil]] | ||
| − | |||
* [[SynView]] | * [[SynView]] | ||
| Line 29: | Line 27: | ||
* [[Caryoscope]] | * [[Caryoscope]] | ||
* [[GeneXplorer]] | * [[GeneXplorer]] | ||
| − | |||
== Pathway Visualization == | == Pathway Visualization == | ||
Latest revision as of 17:11, 27 October 2010
One of GMOD's strength is visualization of different types of biological data.
Genome Visualization
These components allow you to edit and view genome annotations. The two most popular components are GBrowse, a web-based genome viewer, and Apollo, a Java (desktop) application that allows you to both view and edit genome annotations.
Comparative Genomics Visualization
GMOD offers several possibilities specifically for visualizing comparative genomics.
Gene Expression Visualization
Components for visualizing gene expression results; currently focused on microarray based experiments.
Pathway Visualization
Ontology Visualization
Ontology visualization is currently supported by:
