Difference between revisions of "Tripal"
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− | + | {{Tool data | |
− | + | |name=Tripal | |
+ | |status=mature | ||
+ | |dev=active | ||
+ | |support=active | ||
+ | |type=Database (Chado) web front ends, Database tools, Development Platform (has API) | ||
+ | |platform=linux, unix, os x, web | ||
+ | |about=Tripal is a web front end for [[Chado]] databases, based on the [http://www.drupal.org Drupal] content management system. Tripal leverages many of the features of Drupal--ability to search and edit content, detail pages for different types of content, customizable page layouts, and so on--to provide users with an intuitive, flexible interface to a database. | ||
− | + | Features and advantages of Tripal: | |
− | + | ||
− | + | * Allows rapid development of an online genomic database. | |
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* Site administrators can add non-biological content to their sites and allow editing of content by non-technical users. | * Site administrators can add non-biological content to their sites and allow editing of content by non-technical users. | ||
* Integrates directly with GMOD [[Chado]]. | * Integrates directly with GMOD [[Chado]]. | ||
− | * Provides visualizations for | + | * Provides visualizations for Chado "modules" such as [[Chado Sequence Module|features]], [[Chado Companalysis Module|analyses]], [[Chado Library Module|libraries]], [[Chado Stock Module|stocks]], [[Chado Modules|and others]]. |
* Provides an interface for easy editing/updating of data in Chado. | * Provides an interface for easy editing/updating of data in Chado. | ||
* Provides full text and categorical search capabilities for Chado content. | * Provides full text and categorical search capabilities for Chado content. | ||
* Can integrate GMOD tools such as [[CMap]] and [[GBrowse]]. | * Can integrate GMOD tools such as [[CMap]] and [[GBrowse]]. | ||
− | * Integrates with powerful Drupal features like [http://drupal.org/project/views Drupal | + | * Integrates with powerful Drupal features like [http://drupal.org/project/views Drupal views] and [http://drupal.org/project/panels panels] |
− | * Provides fully customizable PHP-based templates to allow | + | * Provides fully customizable PHP-based templates to allow users to change the look and feel of their installation |
* Web-based management of Chado (i.e. installation of Chado v1.11 and loading of ontologies) | * Web-based management of Chado (i.e. installation of Chado v1.11 and loading of ontologies) | ||
* Loaders for GFF3 and FASTA format files. | * Loaders for GFF3 and FASTA format files. | ||
* Provides an API to allow for creation of custom extensions by anyone. | * Provides an API to allow for creation of custom extensions by anyone. | ||
+ | What is Tripal capable of? Check out the [http://tripal.gmod.oicr.on.ca/1.1/ Tripal demo server]. | ||
+ | |||
+ | ==== Tripal Homepage ==== | ||
+ | Get the most up-to-date information about Tripal [http://www.tripal.info here]. | ||
+ | |open source=Yes | ||
+ | |licence=GPLv2 | ||
+ | |input=[[GFF3]], FASTA, Chado DB, tab-separated data, OBO ontology files | ||
+ | |language=PHP, Javascript, HTML | ||
+ | |use template=Yes | ||
+ | |logo=TripalLogo.png | ||
+ | |contact=spficklin@gmail.com | ||
+ | |mail={{MailingListsFor|Tripal}} | ||
+ | |dl src=The latest development version of Tripal is available at the [https://github.com/tripal/tripal Tripal GitHub Page] | ||
+ | |tutorials=[http://tripal.info/tutorials/v2.x Tripal 2.x User's Guide] | ||
+ | |getting started preamble=Full documentation on installing, configuring, and using Tripal is available from the [http://tripal.info/ Tripal website]. | ||
+ | }} | ||
[[Category:Chado]] | [[Category:Chado]] | ||
[[Category:GMOD Components]] | [[Category:GMOD Components]] | ||
[[Category:Tripal]] | [[Category:Tripal]] | ||
+ | {{SemanticLink | ||
+ | |linkurl=http://tripal.info | ||
+ | |linktitle=Tripal Home | ||
+ | |linktype=home page | ||
+ | }} | ||
+ | {{SemanticLink | ||
+ | |linkurl=http://tripal.info/tutorials/v2.x/installation | ||
+ | |linktitle=Download and Install Tripal | ||
+ | |linktype=download | ||
+ | }} | ||
+ | {{InteroperableComponent | ||
+ | |relationship=can embed | ||
+ | |object=GBrowse | ||
+ | }} | ||
+ | {{InteroperableComponent | ||
+ | |relationship=can embed | ||
+ | |object=CMap | ||
+ | }} | ||
+ | {{InteroperableComponent | ||
+ | |relationship=can embed | ||
+ | |object=Galaxy | ||
+ | }} | ||
+ | {{InteroperableComponent | ||
+ | |relationship=provides interface for | ||
+ | |object=Chado | ||
+ | }} |
Latest revision as of 16:33, 29 June 2016
- Mature release
- Development: active
- Support: active
GPLv2
Contents
About Tripal
Tripal is a web front end for Chado databases, based on the Drupal content management system. Tripal leverages many of the features of Drupal--ability to search and edit content, detail pages for different types of content, customizable page layouts, and so on--to provide users with an intuitive, flexible interface to a database.
Features and advantages of Tripal:
- Allows rapid development of an online genomic database.
- Site administrators can add non-biological content to their sites and allow editing of content by non-technical users.
- Integrates directly with GMOD Chado.
- Provides visualizations for Chado "modules" such as features, analyses, libraries, stocks, and others.
- Provides an interface for easy editing/updating of data in Chado.
- Provides full text and categorical search capabilities for Chado content.
- Can integrate GMOD tools such as CMap and GBrowse.
- Integrates with powerful Drupal features like Drupal views and panels
- Provides fully customizable PHP-based templates to allow users to change the look and feel of their installation
- Web-based management of Chado (i.e. installation of Chado v1.11 and loading of ontologies)
- Loaders for GFF3 and FASTA format files.
- Provides an API to allow for creation of custom extensions by anyone.
What is Tripal capable of? Check out the Tripal demo server.
Tripal Homepage
Get the most up-to-date information about Tripal here.
Downloads
The latest development version of Tripal is available at the Tripal GitHub Page
Using Tripal
Full documentation on installing, configuring, and using Tripal is available from the Tripal website.
Publications, Tutorials, and Presentations
Tutorials
Contacts and Mailing Lists
Mailing List Link | Description | Archive(s) | |
---|---|---|---|
Tripal | gmod-tripal | Tripal-related announcements, questions, and requests for help from developers and the community. | Nabble (2010/05+), Sourceforge |
gmod-tripal-devel | Tripal development list | Nabble, Sourceforge |
More on Tripal
See Category:Tripal
"home page" is not in the list of possible values (website, download, source code, public server, demo server, wild URL, documentation, publication, social media, other) for this property.
"home page" is not in the list of possible values (website, download, source code, public server, demo server, wild URL, documentation, publication, social media, other) for this property.
"home page" is not in the list of possible values (website, download, source code, public server, demo server, wild URL, documentation, publication, social media, other) for this property.
"home page" is not in the list of possible values (website, download, source code, public server, demo server, wild URL, documentation, publication, social media, other) for this property.
"home page" is not in the list of possible values (website, download, source code, public server, demo server, wild URL, documentation, publication, social media, other) for this property.
"home page" is not in the list of possible values (website, download, source code, public server, demo server, wild URL, documentation, publication, social media, other) for this property.
Available on platform | linux +, unix +, os x + and web + |
Has URL | http://tripal.info + and http://tripal.info/tutorials/v2.x/installation + |
Has description | Tripal is a web front end for Chado da … Tripal is a web front end for Chado databases, based on the Drupal content management system. Tripal leverages many of the features of Drupal--ability to search and edit content, detail pages for different types of content, customizable page layouts, and so on--to provide users with an intuitive, flexible interface to a database.
Features and advantages of Tripal:
What is Tripal capable of? Check out the Tripal demo server. Tripal Homepage[edit]Get the most up-to-date information about Tripal here.bout Tripal here. + |
Has development status | active + |
Has input format | GFF3 +, FASTA +, Chado DB +, tab-separated data + and OBO ontology files + |
Has licence | GPLv2 + |
Has logo | TripalLogo.png + |
Has software maturity status | mature + |
Has support status | active + |
Has title | Tripal Home + and Download and Install Tripal + |
Has topic | Tripal + |
Interaction type | can embed + and provides interface for + |
Interactor | Tripal + |
Interacts with | GBrowse +, CMap +, Galaxy + and Chado + |
Is open source | Yes + |
Link type | download + |
Tool functionality or classification | Database (Chado) web front ends +, Database tools + and Development Platform (has API) + |
Written in language | PHP +, Javascript + and HTML + |
Has subobjectThis property is a special property in this wiki. | Tripal#http://tripal.info +, Tripal#http://tripal.info/tutorials/v2.x/installation +, Tripal +, Tripal +, Tripal + and Tripal + |