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• GMOD Middleware
  ...del changes recompilation updates Java classes, the relational schema, the web application and mappings between them. Currently InterMine systems requir From the [http://www.hibernate.org Hibernate Web site]:
  40 KB (5,672 words) - 21:27, 15 August 2013
• Textpresso
  |platform=web ...ntific articles split into individual sentences, and the implementation of semantic categories, for which a database of articles and individual sentences can b
  5 KB (697 words) - 17:56, 17 October 2013
• GBrowse FAQ
  GBrowse is a web-server application that is implemented in the Perl programming language ===How do I use semantic zooming to hide a track completely?===
  11 KB (1,733 words) - 14:48, 18 May 2013
• Chado CV Module
  This module is for controlled vocabularies (CVs), semantic networks such as [http://en.wikipedia.org/wiki/Web_Ontology_Language OWL (Ontology Web Language)], but this is outside the current
  37 KB (5,506 words) - 04:35, 18 February 2015
• GBrowse Install HOWTO
  * You will need to have Perl 5.8.6 or higher, and the Apache web server installed. See [[#Prerequisites|Prerequisites]] before running the i ...he web server [http://www.apache.org] is the industry standard open source web server for Unix and Windows systems.
  35 KB (5,565 words) - 22:39, 8 August 2012
• News/October 2010 Calendar
  * SWAT4LS: Semantic Web Applications for Life Sciences abstracts
  1 KB (149 words) - 23:09, 9 October 2012
• News/November 2010 Calendar
  * SWAT4LS: Semantic Web Applications for Life Sciences posters and demos
  1 KB (193 words) - 23:09, 9 October 2012
• GBrowse 1 Configuration HOWTO
  ...abase is its own reference server. (See [http://www.biodas.org/ the BioDAS web site] for an explanation of what reference servers are.) If your web server is behind a firewall and needs to use a proxy in order to access rem
  79 KB (12,563 words) - 16:45, 15 August 2011
• August 2009 GMOD Meeting
  ...ey are extending Chado to better support atlases, and will also make their web front end available as a part of GMOD. ...Drug Data]) task forces of the [http://esw.w3.org/topic/HCLSIG World Wide Web Consortium (W3C) Health Care Life Science Interest Group]. Jun used Open-B
  59 KB (8,741 words) - 19:37, 4 September 2013
• GBrowse 2.0 HOWTO
  ...rg VirtualBox], and the other for running on [http://aws.amazon.com Amazon Web Services]. ...is controlled by a set of text configuration files. You will log into the web server machine and edit these files using a text editor. Alternatively you
  101 KB (15,507 words) - 04:44, 9 January 2014
• January 2009 GMOD Meeting
  ...size robustness or ease of implementation? Should GMOD support ''semantic web'' efforts? ....org/ Bio2RDF] projct, and the [http://swoogle.umbc.edu/ Swoogle] semantic web search engine were also mentioned.
  50 KB (7,612 words) - 18:53, 8 October 2012
• January 2010 GMOD Meeting
  ...fo.org/ The Neuroscience Information Framework]: Establishing a practical semantic framework for neuroscience'' ([ftp://ftp.gmod.org/pub/gmod/Meetings/2010/GM ...ng together large volumes of disparate data into a unified whole using the semantic relationships that ontologies enable.
  26 KB (3,722 words) - 19:17, 4 September 2013
• News/Using GBrowse 2.0 paper
  ...ct display of SAM and BAM sequence alignment files. SAM/BAM tracks provide semantic zooming and support both local and remote data sources. This article provid
  1 KB (179 words) - 17:18, 5 February 2013
• GBrowse NGS Tutorial
  Internet port to run demo web site on (for demo)? [8000] ** They use semantic zooming to display information in different ways at high zoom and low zoom.
  38 KB (5,742 words) - 18:11, 9 October 2012
• MolGenIS
  ...es to RDF, SPARQL and ontologies, processing interfaces to R and SOAP/REST web services, a text-file exchange format and full documentation. There is a gr ...ll happily run on Windows, Linux and Mac boxes with Tomcat or Glassfish as web server and MySQL or PostgreSQL as database server. Developers wanting to us
  2 KB (351 words) - 01:36, 3 October 2012
• September 2010 GMOD Meeting
  | CRAWL ([[Chado]] RESTful Access Web-service Layer) | [[Media:CRAWL_Sept2010.pdf|PDF]], [[#CRAWL (Chado RESTful Access Web-service Layer) - a programmatic interface for querying pathogen genomics da
  100 KB (14,725 words) - 17:31, 30 November 2012
• ISMB/ECCB 2011
  : [[WebApollo]]: A web-based sequence annotation editor for community annotation, Nomi Harris : SADI for GMOD: Bringing Model Organism Data onto the Semantic Web, Ben Vandervalk
  6 KB (747 words) - 18:42, 17 September 2012
• GSoC 2011
  ...bility and wide usability in mind. Data is stored in a MySQL database, the web site is implemented in Perl and data entry tool in Java programming languag ...me pathway diagrams for BioPAX level 2 and 3 exports, and a Java applet or Web Start visualization tool based on our curator tool to display this format.
  20 KB (2,895 words) - 23:51, 25 July 2012
• Widget:Google Document
  ...ey Chernyshev|Sergey Chernyshev]] for [http://www.semanticcommunities.com/ Semantic Communities LLC.] ...Google Doc to be visible on your wiki, you must first '''publish it to the web'''.
  2 KB (284 words) - 21:47, 4 October 2012
• Widget:GoogleDocument
  ...ey Chernyshev|Sergey Chernyshev]] for [http://www.semanticcommunities.com/ Semantic Communities LLC.] ...Google Doc to be visible on your wiki, you must first '''publish it to the web'''.
  2 KB (284 words) - 22:32, 4 October 2012