Difference between revisions of "GMOD Europe 2010"

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| rowspan="2" | [[Image:GMOD2010Europe300.png|center]]
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| rowspan="2" | [[File:GMOD2010Europe300.png|center|220px]]
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| <span style="font-size: 200%; line-height: 140%"><b>GMOD Europe 2010</b><br />13-16 September 2010<br />Cambridge UK</span>
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| <span style="font-size: 200%; line-height: 140%"><b>GMOD Europe 2010</b><br />13-16&nbsp;September&nbsp;2010<br />Cambridge UK</span>
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| rowspan="2" align="center" |
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[[File:Sept2010MtgLogo300.png|150px|link=September 2010 GMOD Meeting|September 2010 GMOD Meeting]]<br />
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[[File:Biomart250.png|170px|link=http://gmod.org/wiki/BioMart_Workshop_-_GMOD_Europe_2010|BioMart Workshop]]<br />
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[[File:InterMineLogo.png|150px|link=http://gmod.org/wiki/InterMine_Workshop_-_GMOD_Europe_2010|InterMine Workshop]]
 
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{|
 
| style="font-size: 140%; line-height: 120%" align="right" | 13-14 Sept
 
| style="font-size: 140%; line-height: 120%" align="right" | 13-14 Sept
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|  
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|
 
| style="font-size: 140%; line-height: 120%" | [[September 2010 GMOD Meeting]]
 
| style="font-size: 140%; line-height: 120%" | [[September 2010 GMOD Meeting]]
 
|-
 
|-
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| align="right" style="font-size: 140%; line-height: 120%" | 15 Sept  
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| align="right" style="font-size: 140%; line-height: 120%" | 15 Sept
 
|
 
|
 
| style="font-size: 140%; line-height: 120%" | {{SatelliteMeetingsSept2010Link}}, {{InterMineWorkshopSept2010Link}}
 
| style="font-size: 140%; line-height: 120%" | {{SatelliteMeetingsSept2010Link}}, {{InterMineWorkshopSept2010Link}}
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'''''GMOD Europe 2010''''' is a four day event starting with a two day [[September 2010 GMOD Meeting|GMOD Meeting]], followed by {{SatelliteMeetingsSept2010Link}} and [[#15 September: InterMine Workshop|workshops]] over the next two days.  GMOD Europe 2010 is hosted by the [http://www.ccbi.cam.ac.uk/ Cambridge Computational Biology Institute] at the University of Cambridge, 13-16 September, 2010.
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'''''GMOD Europe 2010''''' was a four day event starting with a two day [[September 2010 GMOD Meeting|GMOD Meeting]], followed by {{SatelliteMeetingsSept2010Link}} and [[#15 September: InterMine Workshop|InterMine and BioMart workshops]] over the next two days.  GMOD Europe 2010 was hosted by the [http://www.ccbi.cam.ac.uk/ Cambridge Computational Biology Institute] and the [http://www.biomed.cam.ac.uk/gradschool/skills/bioinformatics.html School of Biological Sciences Bioinformatics Training Facility], both at the University of Cambridge.  GMOD Europe 2010 was held 13-16 September, 2010.
  
 +
== Registration ==
 +
<protect>
  
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__TOC__
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The [[September 2010 GMOD Meeting|GMOD meeting]] had a registration fee (&pound;50 early, &pound;65 late) to cover lunches, coffee/tea breaks, and other expenses.  The {{SatelliteMeetingsSept2010Link}}, {{InterMineWorkshopSept2010Link}}, and {{BioMartWorkshopSept2010Link}} were free.
 +
</protect>
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| {{TocRight}}
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|}
  
 
== Events ==
 
== Events ==
  
−
GMOD Europe 2010 spans 4 days.  All events will be held in close proximity to each other in the centre of Cambridge.
+
GMOD Europe 2010 spanned 4 days.  All events were held at the Department of Genetics building in the centre of Cambridge.
  
 
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{| class="wikitable" border="1" cellpadding="5" cellspacing="0"
 
{| class="wikitable" border="1" cellpadding="5" cellspacing="0"
 
|-
 
|-
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! width="5%"  style="background-color: #99ccff; font-size: 140%; line-height: 130%" rowspan="26" | [[GMOD Europe 2010|G<br />M<br />O<br />D<br />&nbsp;<br />E<br />U<br />R<br />O<br />P<br />E<br />&nbsp;<br />2<br />0<br />1<br />0<br />]]
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! width="5%"  style="background-color: #99ccff; font-size: 140%; line-height: 130%" rowspan="9" | [[GMOD Europe 2010|G<br />M<br />O<br />D<br />&nbsp;<br />E<br />U<br />R<br />O<br />P<br />E<br />&nbsp;<br />2<br />0<br />1<br />0<br />]]
 
! width="12%" style="background-color: #99ccff" | Date
 
! width="12%" style="background-color: #99ccff" | Date
 
! width="8%"  style="background-color: #99ccff" | Time
 
! width="8%"  style="background-color: #99ccff" | Time
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|-
 
|-
 
! rowspan="1" style="background-color: #bbffff" | Monday<br />13 September
 
! rowspan="1" style="background-color: #bbffff" | Monday<br />13 September
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! style="background-color: #ccffff" | All Day
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! style="background-color: #ccffff" | 9:15-17:00
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| style="background-color: #ddffff" align="center" colspan="2" | '''[[September 2010 GMOD Meeting|GMOD Community Meeting]]
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| style="background-color: #ddffff" align="center" colspan="2" | '''[[September 2010 GMOD Meeting|GMOD Community Meeting]]'''<br />[http://www.cam.ac.uk/map/v4/drawmap.cgi?mp=down;xx=183;yy=216;mt=c;tl=Department%20of%20Genetics%3B%20Biffen%20Lecture%20Theatre Department of Genetics, Biffen Lecture Theatre]
 
|-
 
|-
 
| colspan="4" |
 
| colspan="4" |
 
|-
 
|-
 
! rowspan="1" style="background-color: #bbffff"| Tuesday<br />14 September
 
! rowspan="1" style="background-color: #bbffff"| Tuesday<br />14 September
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! style="background-color: #ccffff" | All Day
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! style="background-color: #ccffff" | 9:15-17:00
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| style="background-color: #ddffff" align="center" colspan="2" | '''[[September 2010 GMOD Meeting|GMOD Community Meeting]]
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| style="background-color: #ddffff" align="center" colspan="2" | '''[[September 2010 GMOD Meeting|GMOD Community Meeting]]'''<br />[http://www.cam.ac.uk/map/v4/drawmap.cgi?mp=down;xx=183;yy=216;mt=c;tl=Department%20of%20Genetics%3B%20Biffen%20Lecture%20Theatre Department of Genetics, Biffen Lecture Theatre]
 
|-
 
|-
 
| colspan="4" |
 
| colspan="4" |
 
|-
 
|-
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! rowspan="2" style="background-color: #bbffcc" | Wednesday<br />15 September
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! style="background-color: #bbffcc" | Wednesday<br />15 September
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! style="background-color: #ccffdd" | All Day
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! style="background-color: #ccffdd" | 9:30-17:00
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| style="background-color: #ddffdd" align="center" | '''{{SatelliteMeetingsSept2010Link}}'''
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| style="background-color: #ddffdd" align="center" | '''{{SatelliteMeetingsSept2010Link}}'''<br />[http://www.cam.ac.uk/map/v4/drawmap.cgi?mp=down;xx=183;yy=216;mt=c Department of Genetics, Part II Room]
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! style="background-color: #ddffdd" align="center" | '''{{InterMineWorkshopSept2010Link}}'''
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! style="background-color: #ddffdd" align="center" | '''{{InterMineWorkshopSept2010Link}}'''<br />[http://www.cam.ac.uk/map/v4/drawmap.cgi?mp=down;xx=183;yy=216;mt=c Department of Genetics, G12-G13]
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|-
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! style="color: #aaaaaa" | Evening
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! style="color: #aaaaaa" colspan="2" | [http://meetings.cshl.edu/meetings/infouk10.shtml <span style="color: #aaaaff">Genome Informatics starts</span>]
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|-
 
|-
 
| colspan="4" |
 
| colspan="4" |
 
|-
 
|-
 
! rowspan="1" style="background-color: #ffffaa" | Thursday<br />16 September
 
! rowspan="1" style="background-color: #ffffaa" | Thursday<br />16 September
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! style="background-color: #ffffbb" | All Day
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! style="background-color: #ffffbb" | 9:00-17:00
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! style="background-color: #ffffcc" align="center" | '''{{BioMartWorkshopSept2010Link}}'''
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! style="background-color: #ffffcc" align="center" | '''{{BioMartWorkshopSept2010Link}}'''<br />[http://www.cam.ac.uk/map/v4/drawmap.cgi?mp=down;xx=183;yy=216;mt=c Department of Genetics, G12-G13]
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! style="color: #aaaaaa" | [http://meetings.cshl.edu/meetings/infouk10.shtml <span style="color: #aaaaff">Genome Informatics continues</span>]
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! style="color: #aaaaaa" | <span style="color: #aaaaaa">Genome Informatics</span>
 
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</center>
 
</center>
  
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{{ImageRight|Sept2010MtgLogo170.png|September 2010 GMOD Meeting||September 2010 GMOD Meeting}}
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[[File:Sept2010MtgLogo300.png|right|200px|link=September 2010 GMOD Meeting|September 2010 GMOD Meeting]]
 
=== 13-14 September: [[September 2010 GMOD Meeting]] ===
 
=== 13-14 September: [[September 2010 GMOD Meeting]] ===
  
−
GMOD Europe 2010 will start with the [[September 2010 GMOD Meeting]], held 13-14 September.  The meeting will be held at the University of Cambridge, and is hosted by the [http://www.ccbi.cam.ac.uk/ Cambridge Computational Biology Institute]. [[Meetings|GMOD Meetings]] are a mix of [[GMOD Membership#Users|user]] and [[GMOD Membership#Developers|developer]] presentations, and are a great place to find out what is happening in the project, what's coming up, and what others are doing.  See the [[January 2010 GMOD Meeting]] page for an idea of what happens at a GMOD meeting.
+
GMOD Europe 2010 started with the [[September 2010 GMOD Meeting]], held 13-14 September.  The meeting was was hosted by the [http://www.ccbi.cam.ac.uk/ Cambridge Computational Biology Institute]. [[Meetings|GMOD Meetings]] are a mix of [[GMOD Membership#Users|user]] and [[GMOD Membership#Developers|developer]] presentations, and are a great place to find out what is happening in the project, what's coming up, and what others are doing.  See the [[January 2010 GMOD Meeting]] page for an idea of what happens at a GMOD meeting.
  
−
=== 15 September: Satellite Meetings ===
+
=== 15 September: {{SatelliteMeetingsSept2010Link}} ===
  
−
The [[January 2010 GMOD Meeting#Satellite Meetings|Satellite Meetings]] at the [[January 2010 GMOD Meeting]] proved so popular that we are holding them again, this time the day after the meeting, and immediately before [http://meetings.cshl.edu/meetings/infouk10.shtml Genome Informatics 2010].
+
The [[January 2010 GMOD Meeting#Satellite Meetings|Satellite Meetings]] at the [[January 2010 GMOD Meeting]] proved so popular that we held them again, the day after the meeting, and immediately before [http://meetings.cshl.edu/meetings/infouk10.shtml Genome Informatics 2010].  We had two sessions, ''[[Post Reference Genome Tools]]'' in the morning, and ''[[Community Annotation - September 2010 Satellite|Community Annotation]]'' in the afternoon.  See the {{SatelliteMeetingsSept2010Link}} page for more.
  
−
If you have a topic that you want to cover in a Satellite Meeting, please
+
=== 15 September: [[InterMine Workshop - GMOD Europe 2010|InterMine Workshop]] ===
−
# Add the topic to the list below.  Be sure to include your contact information.
+
−
# Send an email about the satellite to the appropriate [[GMOD Mailing Lists]].
+
  
−
All satellite meetings will conclude in time for participatns to make it to the start of Genome Informatics on Wednesday night.
+
[[File:InterMineLogo.png|right|200px|link=InterMine Workshop - GMOD Europe 2010|InterMine Workshop]]
 +
There was a one day [[InterMine Workshop - GMOD Europe 2010|InterMine Workshop]] held on Wednesday, 15 September.
  
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GMOD staff will promote the satellite meetings in any announcements that go out.
+
[[InterMine]] is an open source system for building biological data warehouses with a powerful web interface and query {{GlossaryLink|API|API}}.  See [http://www.flymine.org FlyMine] or [http://www.modmine.org ModMine] for examples.  InterMine can integrate data from many common biological formats and is easy to extend to include your own data.  Parsers are included to load data from [[Chado]], Ensembl, UniProt, KEGG, PubMed, TreeFam, [[GFF3]], {{GlossaryLink|FASTA|FASTA}}, BioPax and many others.
  
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{| class="wikitable"
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See the [[InterMine Workshop - GMOD Europe 2010|InterMine Workshop Page]] for details.
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! Topic
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! Organizer(s)
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! Comments
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|-
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|}
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=== 15 September: [[InterMine]] Workshop ===
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[[File:Biomart250.png|right|200px|link=BioMart Workshop - GMOD Europe 2010|BioMart Workshop]]
 +
=== 16 September: [[BioMart Workshop - GMOD Europe 2010|BioMart Workshop]] ===
  
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{{ImageRight|InterMineLogo.png|InterMine Workshop|150|InterMine}}
+
GMOD Europe finished with a one day {{BioMartWorkshopSept2010Link}} on Thursday, 16 September.  [[BioMart]] provides a single point of access to various 'omics and annotation from disparate data sources, including biomolecular sequence resources, pathways, protein interaction and annotation. This one-day workshop was aimed to biologists who may wish to learn how to programmatically integrate various sources over the web ({{GlossaryLink|API|API}}/webservices), introducing the latest BioMart (0.8) Java libraries that supersedes the current Perl infrastructure.  The hands-on primarily focused on the resources currently available at the [http://www.biomart.org/biomart/martview BioMart Central Portal] and [http://www.biomart.org/ other BioMart portals].
−
There will be a one day [[InterMine]] workshop held on Wednesday, 15 September.  Watch this space for details as they become available.
+
  
−
=== 16 September: [[BioMart]] Workshop ===
+
See the {{BioMartWorkshopSept2010Link}} page for details.
  
−
{{ImageRight|Biomart250.png|BioMart Workshop|150|BioMart}}
+
== Logistics ==
−
There will be a one day [[BioMart]] workshop held on Thursday, 16 September.  This workshop will cover using BioMart, including the BioMart {{GlossaryLink|API|APIs}}.  It will not cover installation and configuration of a local BioMart instance.  (See the [[BioMart Tutorial]] for more on that.)
+
=== Transportation ===
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+
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== Registration ==
+
−
 
+
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We aren't yet sure if we will have coordinated or separate registrations for all events.  A nominal registration (&pound;50 or less) will be charged for the [[September 2010 GMOD Meeting|GMOD meeting]] to cover coffee/tea breaks, lunches, and other expenses.  The {{SatelliteMeetingsSept2010Link}} and {{InterMineWorkshopSept2010Link}} will be free.  Watch this space.
+
−
 
+
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== Transportation ==
+
  
 
See the University's [http://www.cam.ac.uk/visitors/gettingto.html Getting to Cambridge page] for information about arriving by train (also try [http://www.thetrainline.com TheTrainline.com]), car, bus, or air.
 
See the University's [http://www.cam.ac.uk/visitors/gettingto.html Getting to Cambridge page] for information about arriving by train (also try [http://www.thetrainline.com TheTrainline.com]), car, bus, or air.
  
−
== Lodging ==
+
=== Lodging ===
−
 
+
−
We recommend staying  at one of the colleges at Cambridge.  Romms can be booked through [http://www.cambridgerooms.co.uk/book/default.aspx?locationId=3&vendorId=&ay=2010&am=9&ad=12&ly=2010&lm=9&ld=16 CambridgeRooms.co.uk].  Several options are available.  In order of increasing distance from the event:
+
  
 +
We recommended staying  at one of the colleges at Cambridge.  Rooms can be booked through [http://www.cambridgerooms.co.uk/book/default.aspx?locationId=3&vendorId=&ay=2010&am=9&ad=12&ly=2010&lm=9&ld=16 CambridgeRooms.co.uk].  Several options were available.
 +
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This lists reflects prices and availability as of 30 July.
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''This lists reflects prices and availability as of 30 July. Prices and availability will fluctuate over time.''
  
 
You can also check the [http://websites.thedms.co.uk/ee-cc/thedms.aspx?dms=0 Visit Cambridge accommodation search] for other options.
 
You can also check the [http://websites.thedms.co.uk/ee-cc/thedms.aspx?dms=0 Visit Cambridge accommodation search] for other options.
 +
-->
  
 
== Things to do in Cambridge ==
 
== Things to do in Cambridge ==
  
 
There are [http://www.visitcambridge.org/VisitCambridge/WhatToSeeAndDo.aspx lots of things to see and do] in this historic city. If you have time, try and check out a few famous colleges.
 
There are [http://www.visitcambridge.org/VisitCambridge/WhatToSeeAndDo.aspx lots of things to see and do] in this historic city. If you have time, try and check out a few famous colleges.
 +
 +
== See Also ==
 +
 +
* [[GMOD Europe 2009]] - The previous ''GMOD Europe'' event.
 +
* [[January 2010 GMOD Meeting]] - The previous GMOD [[Meetings|community meeting]].
 +
* [http://ensembl.blogspot.com/2010/06/ensembl-developers-workshop-at-genome.html Ensembl Developers Workshop] - This event overlaps entirely (13-15 September) with GMOD Europe.  It's being held in nearby Hinxton, at the Wellcome Trust Genome Campus.  We were unaware of this overlap when we scheduled GMOD Europe 2010.
 +
 +
[[Category:Meetings]]
 +
[[Category:Education and Outreach]]

Latest revision as of 17:04, 2 April 2013

GMOD2010Europe300.png
 GMOD Europe 2010
13-16 September 2010
Cambridge UK

September 2010 GMOD Meeting
BioMart Workshop
InterMine Workshop

13-14 Sept September 2010 GMOD Meeting
15 Sept Satellite Meetings, InterMine Workshop
16 Sept BioMart Workshop

GMOD Europe 2010 was a four day event starting with a two day GMOD Meeting, followed by Satellite Meetings and InterMine and BioMart workshops over the next two days. GMOD Europe 2010 was hosted by the Cambridge Computational Biology Institute and the School of Biological Sciences Bioinformatics Training Facility, both at the University of Cambridge. GMOD Europe 2010 was held 13-16 September, 2010.

Registration

The GMOD meeting had a registration fee (£50 early, £65 late) to cover lunches, coffee/tea breaks, and other expenses. The Satellite Meetings, InterMine Workshop, and BioMart Workshop were free.

Events

GMOD Europe 2010 spanned 4 days. All events were held at the Department of Genetics building in the centre of Cambridge.

G
M
O
D
 
E
U
R
O
P
E
 
2
0
1
0
 		Date Time Event
Monday
13 September 		9:15-17:00 GMOD Community Meeting
Department of Genetics, Biffen Lecture Theatre
Tuesday
14 September 		9:15-17:00 GMOD Community Meeting
Department of Genetics, Biffen Lecture Theatre
Wednesday
15 September 		9:30-17:00 Satellite Meetings
Department of Genetics, Part II Room 		InterMine Workshop
Department of Genetics, G12-G13
Thursday
16 September 		9:00-17:00 BioMart Workshop
Department of Genetics, G12-G13 		Genome Informatics
September 2010 GMOD Meeting

13-14 September: September 2010 GMOD Meeting

GMOD Europe 2010 started with the September 2010 GMOD Meeting, held 13-14 September. The meeting was was hosted by the Cambridge Computational Biology Institute. GMOD Meetings are a mix of user and developer presentations, and are a great place to find out what is happening in the project, what's coming up, and what others are doing. See the January 2010 GMOD Meeting page for an idea of what happens at a GMOD meeting.

15 September: Satellite Meetings

The Satellite Meetings at the January 2010 GMOD Meeting proved so popular that we held them again, the day after the meeting, and immediately before Genome Informatics 2010. We had two sessions, Post Reference Genome Tools in the morning, and Community Annotation in the afternoon. See the Satellite Meetings page for more.

15 September: InterMine Workshop

InterMine Workshop

There was a one day InterMine Workshop held on Wednesday, 15 September.

InterMine is an open source system for building biological data warehouses with a powerful web interface and query API. See FlyMine or ModMine for examples. InterMine can integrate data from many common biological formats and is easy to extend to include your own data. Parsers are included to load data from Chado, Ensembl, UniProt, KEGG, PubMed, TreeFam, GFF3, FASTA, BioPax and many others.

See the InterMine Workshop Page for details.

BioMart Workshop

16 September: BioMart Workshop

GMOD Europe finished with a one day BioMart Workshop on Thursday, 16 September. BioMart provides a single point of access to various 'omics and annotation from disparate data sources, including biomolecular sequence resources, pathways, protein interaction and annotation. This one-day workshop was aimed to biologists who may wish to learn how to programmatically integrate various sources over the web (API/webservices), introducing the latest BioMart (0.8) Java libraries that supersedes the current Perl infrastructure. The hands-on primarily focused on the resources currently available at the BioMart Central Portal and other BioMart portals.

See the BioMart Workshop page for details.

Logistics

Transportation

See the University's Getting to Cambridge page for information about arriving by train (also try TheTrainline.com), car, bus, or air.

Lodging

We recommended staying at one of the colleges at Cambridge. Rooms can be booked through CambridgeRooms.co.uk. Several options were available.

Things to do in Cambridge

There are lots of things to see and do in this historic city. If you have time, try and check out a few famous colleges.

See Also

Retrieved from "http://gmod.org/mediawiki/index.php?title=GMOD_Europe_2010&oldid=23365"