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Difference between revisions of "ISMB 2010"
From GMOD
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| rowspan="4" | [http://www.iscb.org/ismb2010-program/satellite-meetings Satellites & SIGs] | | rowspan="4" | [http://www.iscb.org/ismb2010-program/satellite-meetings Satellites & SIGs] | ||
| [http://www.iscb.org/ismb2010-program/satellite-meetings#BOSC Bioinformatics Open Source Conference (BOSC)], Kam Dahlquist | | [http://www.iscb.org/ismb2010-program/satellite-meetings#BOSC Bioinformatics Open Source Conference (BOSC)], Kam Dahlquist | ||
− | | | + | | See below for specific talks |
|- | |- | ||
| [http://www.iscb.org/ismb2010-program/satellite-meetings#BioOntologies Bio-Ontologies], Nigam Shah, ''et al.'' | | [http://www.iscb.org/ismb2010-program/satellite-meetings#BioOntologies Bio-Ontologies], Nigam Shah, ''et al.'' | ||
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| | | | ||
|- | |- | ||
− | ! rowspan=" | + | | colspan="6" | |
+ | |- | ||
+ | ! rowspan="2" | Friday July 9 | ||
+ | | align="center" | 12:15-12:30 | ||
+ | | rowspan="2" | [http://www.iscb.org/ismb2010-program/satellite-meetings#BOSC BOSC] | ||
+ | | [http://www.slideshare.net/bosc2010/afgan-bosc2010-galaxycloud Deploying Galaxy on the Cloud], Enis Afgan, | ||
+ | | [[Galaxy]] | ||
+ | | [[Media:DeployingGalaxyCloudBOSC2010.pdf|PDF]] | ||
+ | |- | ||
+ | | align="center" | 3:30-3:38 | ||
+ | | [http://www.slideshare.net/bosc2010/hemmerich-bosc2010-isgaergatis Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis], [[User:Chemmeri|Chris Hemmerich]] | ||
+ | | [[Ergatis]] | ||
+ | | [[Media:NGSTranscriptomeISGAErgatis.pdf|PDF]] | ||
+ | |- | ||
+ | ! colspan="6" | | ||
+ | |- | ||
+ | ! rowspan="2" | Saturday July 10 | ||
| align="center" | 1:30-5:30 | | align="center" | 1:30-5:30 | ||
| [http://www.iscb.org/ismb2010-program/ismb2010-tutorials Tutorials] | | [http://www.iscb.org/ismb2010-program/ismb2010-tutorials Tutorials] | ||
| [http://www.iscb.org/ismb2010-program/ismb2010-tutorials#PM4 PM 4: Galaxy: Analyze, Visualize, Communicate], The [[Galaxy]] Team | | [http://www.iscb.org/ismb2010-program/ismb2010-tutorials#PM4 PM 4: Galaxy: Analyze, Visualize, Communicate], The [[Galaxy]] Team | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | |- | ||
+ | | align="center" | 4:00-4:15 | ||
+ | | [http://www.iscb.org/ismb2010-program/satellite-meetings#BOSC BOSC]] | ||
+ | | [, [[User:Lstein|Lincoln Stein]] | ||
+ | | [[GBrowse]] | ||
+ | | | ||
+ | |- | ||
+ | ! colspan="6" | | ||
|- | |- | ||
! rowspan="3" | Sunday July 11 | ! rowspan="3" | Sunday July 11 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT08 TT08: InterPro protein sequence analysis and classification], Sarah Hunter | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT08 TT08: InterPro protein sequence analysis and classification], Sarah Hunter | ||
| [[BioMart]] | | [[BioMart]] | ||
+ | |- | ||
+ | ! colspan="6" | | ||
|- | |- | ||
! rowspan="9" | Monday July 12 | ! rowspan="9" | Monday July 12 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E02: An Advanced Web Query Interface for Biological Databases], Peter Karp | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E02: An Advanced Web Query Interface for Biological Databases], Peter Karp | ||
| [[Pathway Tools]] | | [[Pathway Tools]] | ||
− | | [[PathwayToolsPosterISMB2010.ppt|PPT]], | + | | [[PathwayToolsPosterISMB2010.ppt|PPT]], [[PathwayToolsPosterISMB2010.pdf|PDF]] |
|- | |- | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E18: ZFNGenome: A GBrowse-based tool for identifying Zinc Finger Nuclease target sites in model organisms], Deepak Reyon | | [http://www.iscb.org/cms_addon/conferences/ismb2010/posterlist.php?cat=E E18: ZFNGenome: A GBrowse-based tool for identifying Zinc Finger Nuclease target sites in model organisms], Deepak Reyon | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT28 TT28: Sample tracking and automated data processing in Galaxy for NGS facilities], Anton Nekrutenko | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT28 TT28: Sample tracking and automated data processing in Galaxy for NGS facilities], Anton Nekrutenko | ||
| [[Galaxy]] | | [[Galaxy]] | ||
+ | |- | ||
+ | ! colspan="6" | | ||
|- | |- | ||
! rowspan="3" | Tuesday July 13 | ! rowspan="3" | Tuesday July 13 | ||
| align="center" | 11:15-11:40 | | align="center" | 11:15-11:40 | ||
| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php Technology] | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php Technology] | ||
− | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT32 TT32: GMOD Presents GBrowse 2.0 and JBrowse], [[User:Scott|Scott Cain]] | + | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT32 TT32: GMOD Presents GBrowse 2.0 and JBrowse], [[User:Scott|Scott Cain]] |
| [[GBrowse]], [[JBrowse]] | | [[GBrowse]], [[JBrowse]] | ||
| [http://prezi.com/nx4jy4etq-ug/gbrowse-20-and-jbrowse-for-ismb/ Prezi] | | [http://prezi.com/nx4jy4etq-ug/gbrowse-20-and-jbrowse-for-ismb/ Prezi] | ||
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| Lunch | | Lunch | ||
| Informal gathering at the ISMB lunch. Please look for [[User:Scott|Scott Cain]] in the back center of the lunch room. There will be "GMOD reserved" table tents on a few tables back there and Scott will be wearing his [http://www.cafepress.com/GenericMOD GMOD shirt]. Please stop by and chat if you are at ISMB. | | Informal gathering at the ISMB lunch. Please look for [[User:Scott|Scott Cain]] in the back center of the lunch room. There will be "GMOD reserved" table tents on a few tables back there and Scott will be wearing his [http://www.cafepress.com/GenericMOD GMOD shirt]. Please stop by and chat if you are at ISMB. | ||
+ | | | ||
|- | |- | ||
| align="center" | 2:45-3:10 | | align="center" | 2:45-3:10 | ||
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| [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT38 TT38: Demonstration of The Pathway Tools Software and BioCyc Databases], Peter Karp. ([[Pathway Tools]] is also featured in the [http://www.iscb.org/cms_addon/conferences/ismb2010/artscience.php Art and Science Exhibition].) | | [http://www.iscb.org/cms_addon/conferences/ismb2010/technologytrack.php#TT38 TT38: Demonstration of The Pathway Tools Software and BioCyc Databases], Peter Karp. ([[Pathway Tools]] is also featured in the [http://www.iscb.org/cms_addon/conferences/ismb2010/artscience.php Art and Science Exhibition].) | ||
| [[Pathway Tools]] | | [[Pathway Tools]] | ||
− | | [[:Media:PathwayToolsTalkISMB2010.ppt|PPT]], [[:Media:PathwayToolsTalkISMB2010.pdf|PDF]] | + | | [[:Media:PathwayToolsTalkISMB2010.ppt|PPT]], [[:Media:PathwayToolsTalkISMB2010.pdf|PDF]] |
|} | |} | ||
Revision as of 16:52, 15 July 2010
ISMB 2010 was held July 9-13 in Boston. As in past years, there was once again significant GMOD content at ISMB, including
- talks on Galaxy, GBrowse, JBrowse, Pathway Tools, ...
- a tutorial on Galaxy,
- many posters, and
- several Special Interest Group (SIG) meetings relevant to GMOD members.
Events, Talks, and Posters
Flier
GMOD at ISMB 2010 | Media:GMODatISMB2010.pdf}} | A flier highlighting GMOD related content at ISMB 2010 is now available. You can print this ahead of time, or pick up a copy from several of the speakers. |