| Day
| Time
| Track
| Title & Presenter/Organizer
| Components
| Slides / Poster
|
| Friday & Saturday July 9-10
| 8:30-6:30
| Satellites & SIGs
| Bioinformatics Open Source Conference (BOSC), Kam Dahlquist
| See below for specific talks
| SlideShare
|
| Bio-Ontologies, Nigam Shah, et al.
|
|
|
| HITSeq: High throughput Sequencing, Inanc Birol, et al.
|
|
|
| Metagenomics, Metadata, Meta-analysis (M3) & BioSharing, Ed DeLong, et al.
|
|
|
|
|
| Friday July 9
| 12:15-12:30
| BOSC
| Deploying Galaxy on the Cloud, Enis Afgan,
| Galaxy
| PDF
|
| 3:30-3:38
| Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis, Chris Hemmerich
| Ergatis
| PDF
|
|
|
| Saturday July 10
| 1:30-5:30
| Tutorials
| PM 4: Galaxy: Analyze, Visualize, Communicate, The Galaxy Team
| Galaxy
|
|
| 4:00-4:15
| BOSC
| GBrowse2, Lincoln Stein
| GBrowse
| Prezi
|
|
|
| Sunday July 11
| 12:40-2:30
| Posters
| I01: AGeS: A Software System for Annotation and Analysis of Genome Sequences, Nela Zavaljevski
| DIYA, GBrowse
| PPT, PDF
|
| I15: GBrowse and Next Generation Sequencing Data, Scott Cain
| GBrowse
|
|
| 2:30-3:25
| Technology
| TT08: InterPro protein sequence analysis and classification, Sarah Hunter
| BioMart
|
|
|
|
| Monday July 12
| 12:40-2:30
| Posters
| E02: An Advanced Web Query Interface for Biological Databases, Peter Karp
| Pathway Tools
| PPT, PDF
|
| E18: ZFNGenome: A GBrowse-based tool for identifying Zinc Finger Nuclease target sites in model organisms, Deepak Reyon
| GBrowse
| PDF
|
| E30: Choosing a Genome Browser for a Model Organism Database: Surveying the Maize Community, Taner Sen
| GBrowse
| PDF
|
| I10: Integrative Services for Genomic Analysis (ISGA) - An Intuitive Web Server for Prokaryotic Genome Annotation and Other Analyses, Christopher Hemmerich
| Ergatis
| PDF
|
| J60:Online Quantitative Transcriptome Analysis, Regina Bohnert
| Galaxy
| PDF
|
| U60: Galaxy NGS functionality from sample tracking to SNP calling: An interactive poster, Ramkrishna Chakrabarty
| Galaxy
| PDF
|
| Z02: WebGBrowse - A Web Server for GBrowse, Ram Podicheti
| WebGBrowse
|
|
| 3:30-3:55
| Technology
| TT26: NGS Analysis with Galaxy on the Cloud, Anton Nekrutenko
| Galaxy
|
|
| 4:00-4:25
| TT28: Sample tracking and automated data processing in Galaxy for NGS facilities, Anton Nekrutenko
| Galaxy
|
|
|
|
| Tuesday July 13
| 11:15-11:40
| Technology
| TT32: GMOD Presents GBrowse 2.0 and JBrowse, Scott Cain
| GBrowse, JBrowse
| Prezi
|
| 11:45-??
| Lunch
| Informal gathering at the ISMB lunch. Please look for Scott Cain in the back center of the lunch room. There will be "GMOD reserved" table tents on a few tables back there and Scott will be wearing his GMOD shirt. Please stop by and chat if you are at ISMB.
|
|
|
| 2:45-3:10
| Technology
| TT38: Demonstration of The Pathway Tools Software and BioCyc Databases, Peter Karp. (Pathway Tools is also featured in the Art and Science Exhibition.)
| Pathway Tools
| PPT, PDF
|
