GMOD
ISMB 2010
| GMOD will also have a strong presence at ISMB/ECCB 2011. | ISMB 2010 was held July 9-13 in Boston. As in past
years, there was once again significant GMOD content at ISMB, including
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Events, Talks, and Posters
| Day | Time | Track | Title & Presenter/Organizer | Components | Slides / Poster | |—-|:–:|—-|—-|—-|—-| | Friday & Saturday July 9-10 | 8:30-6:30 | Satellites & SIGs | Bioinformatics Open Source Conference (BOSC), Kam Dahlquist | See below for specific talks | SlideShare | | | | | Bio-Ontologies, Nigam Shah, et al. | | | | | | | HITSeq: High throughput Sequencing, Inanc Birol, et al. | | | | | | | Metagenomics, Metadata, Meta-analysis (M3) & BioSharing, Ed DeLong, et al. | | | | | | | | | | | Friday July 9 | 12:15-12:30 | BOSC | Deploying Galaxy on the Cloud, Enis Afgan, | Galaxy | PDF | | | 3:30-3:38 | | Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis, Chris Hemmerich | Ergatis | PDF | | | | | | | | | Saturday July 10 | 1:30-5:30 | Tutorials | PM 4: Galaxy: Analyze, Visualize, Communicate, The Galaxy Team | Galaxy | | | | 4:00-4:15 | BOSC | GBrowse2, Lincoln Stein | GBrowse | Prezi | | | | | | | | | Sunday July 11 | 12:40-2:30 | Posters | I01: AGeS: A Software System for Annotation and Analysis of Genome Sequences, Nela Zavaljevski | DIYA, GBrowse | PPT, PDF | | | | | I15: GBrowse and Next Generation Sequencing Data, Scott Cain | GBrowse | | | | 2:30-3:25 | Technology | TT08: InterPro protein sequence analysis and classification, Sarah Hunter | BioMart | | | | | | | | | | Monday July 12 | 12:40-2:30 | Posters | E02: An Advanced Web Query Interface for Biological Databases, Peter Karp | Pathway Tools | PPT, PDF | | | | | E18: ZFNGenome: A GBrowse-based tool for identifying Zinc Finger Nuclease target sites in model organisms, Deepak Reyon | GBrowse | PDF | | | | | E30: Choosing a Genome Browser for a Model Organism Database: Surveying the Maize Community, Taner Sen | GBrowse | PDF | | | | | I10: Integrative Services for Genomic Analysis (ISGA) - An Intuitive Web Server for Prokaryotic Genome Annotation and Other Analyses, Christopher Hemmerich | Ergatis | PDF | | | | | J60:Online Quantitative Transcriptome Analysis, Regina Bohnert | Galaxy | PDF | | | | | U60: Galaxy NGS functionality from sample tracking to SNP calling: An interactive poster, Ramkrishna Chakrabarty | Galaxy | PDF | | | | | Z02: WebGBrowse - A Web Server for GBrowse, Ram Podicheti | WebGBrowse | | | | 3:30-3:55 | Technology | TT26: NGS Analysis with Galaxy on the Cloud, Anton Nekrutenko | Galaxy | | | | 4:00-4:25 | | TT28: Sample tracking and automated data processing in Galaxy for NGS facilities, Anton Nekrutenko | Galaxy | | | | | | | | | | Tuesday July 13 | 11:15-11:40 | Technology | TT32: GMOD Presents GBrowse 2.0 and JBrowse, Scott Cain | GBrowse, JBrowse | Prezi | | | 11:45-?? | Lunch | Informal gathering at the ISMB lunch. Please look for Scott Cain in the back center of the lunch room. There will be “GMOD reserved” table tents on a few tables back there and Scott will be wearing his GMOD shirt. Please stop by and chat if you are at ISMB. | | | | | 2:45-3:10 | Technology | TT38: Demonstration of The Pathway Tools Software and BioCyc Databases, Peter Karp. (Pathway Tools is also featured in the Art and Science Exhibition.) | Pathway Tools | PPT, PDF |
Flier
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| A flier highlighting GMOD related content at ISMB 2010 is now available. You can print this ahead of time, or pick up a copy from several of the speakers. |