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Difference between revisions of "2009 GMOD Summer School - Europe"
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The course is being held at the [http://www.mstc.ox.ac.uk/ Medical Science Teaching Centre (MSTC)] at the [http://www.ox.ac.uk/ University of Oxford], in [http://www.oxfordcity.co.uk/ Oxford, United Kingdom]. | The course is being held at the [http://www.mstc.ox.ac.uk/ Medical Science Teaching Centre (MSTC)] at the [http://www.ox.ac.uk/ University of Oxford], in [http://www.oxfordcity.co.uk/ Oxford, United Kingdom]. | ||
+ | == Transportation, Lodging, Meals == | ||
− | + | See the [[GMOD Europe 2009#Transportation|Transportation]] and [[GMOD Europe 2009#Lodging|Lodging]] sections of the [[GMOD Europe 2009]] page for information on tranport and lodging for both the summer school and [[August 2009 GMOD Meeting]]. | |
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− | See the [[GMOD Europe 2009#Lodging|Lodging | + | |
Breakfast is provided by the recommending lodging option(s). Lunch will be provided for the first two days of the course. Dinner is on your own every night. | Breakfast is provided by the recommending lodging option(s). Lunch will be provided for the first two days of the course. Dinner is on your own every night. |
Revision as of 06:14, 5 March 2009
GMOD Europe 2009 | GMOD Europe 2009}} | 2009 GMOD Summer School - Europe 3-6 August, 2009 Oxford UK
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The 2009 GMOD Summer School - Europe will be held 3-6 August in Oxford, UK. Like the 2008 GMOD Summer School, this course will focus on installing, configuring and integrating popular GMOD Components.
The summer school is a part of GMOD Europe 2009 a week long event that also include the August 2009 GMOD Meeting. Another GMOD Summer School is being offered in Durham, North Carolina in July 2009.
Contents
Draft Program
The program will feature 3 ½ days of hands-on training starting with an overview of GMOD, and then covering the installation, configuration, and administration of several popular GMOD Components.
G M O D E U R O P E 2 0 0 9 |
Date | Time | Session |
---|---|---|---|
Monday 3 August |
8:30 | Introduction and Overview Scott Cain and Dave Clements Participant and instructor introductions, how the GMOD project works, what software tools are available in GMOD, how they interoperate, what resources are needed to get a GMOD installation up and running, and course overview. | |
10:10 | VMware and BioPerl Setup Everyone Get the GMOD Summer School VMware image up and running on your laptop, and then finish installation of BioPerl. | ||
12:00 | Catered Lunch | ||
13:00 | GBrowse Scott Cain and Sheldon Mckay | ||
18:00 | Day ends | ||
Tuesday 4 August |
8:30 | BioMart Junjun Zhang or Syed Haider | |
12:30 | Catered Lunch | ||
13:30 | Apollo Ed Lee | ||
18:00 | Day ends | ||
Wednesday 5 August |
8:30 | GBrowse_syn Sheldon Mckay | |
12:30 | Lunch on your own | ||
13:45 | Chado Scott Cain and Dave Clements | ||
18:00 | Day ends | ||
Thursday 6 August |
8:30 | Artemis-Chado Integration Robin Houston and Tim Carver Artemis and ACT: Overview, installation, configuration, reading & writing data to Chado. | |
10:10 | JBrowse Ian Holmes | ||
11:30 | Wrapup and Resources Dave Clements and Scott Cain | ||
12:00 | Summer School Ends | ||
13:30- 18:00 |
August 2009 GMOD Meeting | ||
Friday 7 August |
8:30- 18:00 |
Likely Instructors
Instructor | GMOD Contribution | Affiliation |
---|---|---|
Scott Cain | GMOD Project Coordinator | Ontario Institute for Cancer Research |
Tim Carver | Artemis lead developer | Wellcome Trust Sanger Institute |
Dave Clements | GMOD Help Desk | National Evolutionary Synthesis Center (NESCent) |
Ian Holmes | JBrowse PI | University of California, Berkeley |
Robin Houston | Artemis manager | Wellcome Trust Sanger Institute |
Ed Lee | Lead Apollo developer | Berkeley Bioinformatics Open-source Projects (BBOP) |
Sheldon Mckay | Lead GBrowse_syn developer, GBrowse developer | Cold Spring Harbor Laboratory |
Syed Haider (or Junjun Zhang) | BioMart developer | European Bioinformatics Institute |
Applications
We expect to have the cost and syllabus finalised in March, at which point we will start accepting applications. Enrollment is limited. If interest exceeds the limited capacity of this course (we expect it will), then we will select attendees based on application.
Cost
Tuition for the course will likely be around £75. We will have a definitive tuition rate when we open the course for applications.
Location
The course is being held at the Medical Science Teaching Centre (MSTC) at the University of Oxford, in Oxford, United Kingdom.
Transportation, Lodging, Meals
See the Transportation and Lodging sections of the GMOD Europe 2009 page for information on tranport and lodging for both the summer school and August 2009 GMOD Meeting.
Breakfast is provided by the recommending lodging option(s). Lunch will be provided for the first two days of the course. Dinner is on your own every night.
Sponsors
We would like to thank the Computational Biology Research Group (CBRG) at the University of Oxford for hosting and sponsoring the week's events.
We would also welcome additional sponsors to help reduce the cost of registration. Please contact the GMOD Help Desk if you are interested.