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JBrowse
Available on platform web  +
Has URL http://jbrowse.org/install/  + , http://jbrowse.org  + , http://twitter.com/usejbrowse  + , http://github.com/GMOD/jbrowse  + , http://jbrowse.org/demos  + , http://icemangenome.net/%E2%80%8E  + , http://genomesunzipped.org/jbrowse  + , http://beetlebase.org  + , http://www.medicinalgenomics.com/the-jane-ome/  +
Has description Browse the genome of Ötzi the ice man  + , JBrowse is a genome browser with a fully dJBrowse is a genome browser with a fully dynamic AJAX interface, being developed as the eventual successor to GBrowse. It is very fast and scales well to large datasets. JBrowse is javascript-based and does almost all of its work directly in the user's web browser, with minimal requirements for the server. ===Features=== *Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. *Scales easily to multi-gigabase genomes and deep-coverage sequencing. *Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, VCF (with tabix), REST, and more. BAM, BigWig, and VCF data are displayed directly from the compressed binary file with no conversion needed. *Very light server resource requirements. In fact, JBrowse has no back-end server code, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance.ets from a single low-cost cloud instance.  +
Has development status active  +
Has input format [[GFF3]]  + , BED  + , FASTA  + , WIG  + , BedGraph  + , Bio::DB::*  + , UCSC  + , Wiggle  + , BigWig  + , BAM  +
Has licence [http://opensource.org/licenses/LGPL-3.0 LGPL]  + , [http://opensource.org/licenses/Artistic-2.0 Artistic License 2.0]  +
Has logo JBrowseLogo.png  +
Has software maturity status mature  +
Has support status active  +
Has title JBrowse demos  + , Ice Man Genome  + , Genomes Unzipped: Public Personal Genomics  + , BeetleBase  + , The Jane-Ome, medicinal marijuana project  +
Has topic JBrowse +
Is open source Yes  +
Link type download  + , social media  + , website  + , source code  + , demo server  + , wild URL  +
Release date 2008  +
Tool functionality or classification Genome visualization  +
Written in language Javascript  + , Perl  +
Has queryThis property is a special property in this wiki. JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse + , JBrowse +
Categories JBrowse  + , GMOD Components  + , AJAX  + , GMOD Component  + , SemanticLink  +
Modification dateThis property is a special property in this wiki. 15 April 2016 19:18:52  +
Has subobjectThis property is a special property in this wiki. JBrowse#http://jbrowse.org/install/ + , JBrowse#http://jbrowse.org + , JBrowse#http://twitter.com/usejbrowse + , JBrowse#http://github.com/GMOD/jbrowse + , JBrowse#http://jbrowse.org/demos + , JBrowse#http://icemangenome.net/‎ + , JBrowse#http://genomesunzipped.org/jbrowse + , JBrowse#http://beetlebase.org + , JBrowse#http://www.medicinalgenomics.com/the-jane-ome/ +
hide properties that link here 
GMOD Malaysia 2014/JBrowse Tutorial + , JBrowse + , JBrowse Tutorial 2010 + , JBrowse Tutorial 2013 + , JBrowse Tutorial PAG 2015 + , JBrowse Tutorial PAG 2016 + , JBrowse Tutorial PAG 2017 + , JBrowse Tutorial Programming for Biology 2014 + , JBrowse Tutorial Programming for Biology 2015 + , JBrowse Tutorial Programming for Biology 2016 + Has topic
InterMine + , WebApollo + , WebApollo2 + Interacts with
JBrowseDev/Installation + , JBrowseDev/Main + , Jbrowse + redirect page
 

 

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