GMOD Europe 2010 early registration ends Sept 5. Register now!

Main Page

From GMOD

(Redirected from GMOD)
Jump to: navigation, search
GMOD Europe 2010
Early registration ends 5 Sept
Biocuration 2010
Abstracts due 31 Aug
Early registration ends 6 Sept
GMOD News GMOD News Feed

GMOD Europe 2010 Update
Biocuration 2010
ISGA Joins GMOD
September 2010 Calendar
Opening @ Phytozome (JGI)
Chado 1.11 Release
GMOD Europe 2010
GMOD Evo Hackathon Open Call
GMOD Nomination: ISGA
August 2010 Calendar

New & Revised Pages All recent changes feed

BioMart Workshop - GMOD Europe 2010GMOD Europe 2010September 2010 GMOD MeetingGBrowse MacOSX HOWTOWebGBrowseTalk:Chado Natural Diversity Module Working GroupGBrowse 2.0 HOWTOGMOD NewsPAG 2011ISGA

Popular GMOD Tools

Genome Browsing and Editing
  GBrowse: Genome annotation viewer
  Apollo: Genome annotation editor
Comparative Genomics
  CMap: Comparative map viewer
  GBrowse_syn: Synteny viewer
Database Tools
  Chado: Biological database schema
  BioMart: Data mining system
  GMODTools: Chado to Fasta, GFF, ...
  InterMine: Data warehousing
Biological Pathways
  Pathway Tools: Metabolic, regulatory
Publication Curation
  Textpresso: text mining

Welcome to GMOD

GMOD is the Generic Model Organism Database project, a collection of open source software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at many large and small community databases.

How do I Get Started?

See Overview for the big picture. For an introduction to specific GMOD components see the list of the most popular tools at the right, or visit GMOD Components for a comprehensive list of GMOD tools. If GMOD looks promising for your needs, consider attending the next GMOD community meeting.

How do I Get Support?

GMOD support is available from several different sources. Support introduces each support option (this web site, GMOD Mailing Lists, Training and Outreach activities (including GMOD Summer Schools), and the GMOD Help Desk) and offers guidance on which one is the most appropriate for your question.

How do I Get Involved?

September 2010 GMOD Meeting

As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. Existing and potential users are encouraged to provide feedback via mailing lists or the help desk. The GMOD Project Page lists projects in need of ideas and developers. You can also attend project meetings. The next meeting will be held in Cambridge, UK, in September 2010, as part of GMOD Europe 2010.

Contributing Organizations

FlyBase   WormBase wFleaBase   CSHL    Gramene     TAIR NESCent SGD MGI DictyBase   RGD   BioCyc   University of Utah    EcoliWiki   ParameciumDB SGN OICR   CUGI iPlant

Personal tools
Documentation
Developers