Difference between revisions of "User:Mckays"
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==Sheldon McKay== | ==Sheldon McKay== | ||
− | [[Image: | + | [[Image:sheldon2.jpg|200px|right|This is Sheldon]] |
− | I am a computational biologist | + | I am a computational biologist, trained as a geneticist and phylogeneticist and my interests are focused on comparative genomics and evolution. I have used bioinformatics techniques extensively for genome analysis, genome annotation, and comparative genomics. I develop and use scientific software tools for data analysis and visualization. I also do research in genome structure and evolution and have ongoing collaborations with large-scale cross-species RNAi, RNA-Seq and EST-based gene expression analysis. I am active in the Generic Model Organism Database (GMOD) Project. I currently serve as a coordinator of the Model Organism Database Unifoed Gene Model working group, charged with migrating model organism data models and associated infrastructure to the NIH commons cloud computing platform. |
− | I am an open source and data interoperability advocate and contribute to a number of collaborative software development projects. I also do outreach to promote adoption of <span class=pops>[http://iplantcollaborative.org iPlant] and GMOD tools and software, in particular the Generic Synteny Browser ([[GBrowse_syn]]), for which I teach at the GMOD summer schools | + | I am an open source and data interoperability advocate and contribute to a number of collaborative software development projects. I also do outreach to promote adoption of <span class=pops>[http://iplantcollaborative.org iPlant] and GMOD tools and software, in particular the Generic Synteny Browser ([[GBrowse_syn]]), for which I teach at the GMOD summer schools. |
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==More Information== | ==More Information== | ||
*Click on a section title below to open:<br> | *Click on a section title below to open:<br> | ||
− | <div class=switch id=" Background"> | + | <div class=switch id=" Background" style="padding-right:10px"> |
;Research | ;Research | ||
:Evolutionary genetics | :Evolutionary genetics | ||
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:SQL and database design | :SQL and database design | ||
:Massive Parallel Computing with PBS and SGE | :Massive Parallel Computing with PBS and SGE | ||
− | :Genome database mining (NCBI, | + | :Genome database mining (NCBI, Ensembl) |
:Gene Ontology and KEGG pathway analysis | :Gene Ontology and KEGG pathway analysis | ||
:Genome and Comparative Genome data visualization | :Genome and Comparative Genome data visualization | ||
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<div class=switch id=" Contact information" title=" Contact information"> | <div class=switch id=" Contact information" title=" Contact information"> | ||
− | Email | + | Email: sheldon.mckay@gmail.com<br> |
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</div> | </div> | ||
Revision as of 13:46, 6 February 2016
Sheldon McKay
I am a computational biologist, trained as a geneticist and phylogeneticist and my interests are focused on comparative genomics and evolution. I have used bioinformatics techniques extensively for genome analysis, genome annotation, and comparative genomics. I develop and use scientific software tools for data analysis and visualization. I also do research in genome structure and evolution and have ongoing collaborations with large-scale cross-species RNAi, RNA-Seq and EST-based gene expression analysis. I am active in the Generic Model Organism Database (GMOD) Project. I currently serve as a coordinator of the Model Organism Database Unifoed Gene Model working group, charged with migrating model organism data models and associated infrastructure to the NIH commons cloud computing platform.
I am an open source and data interoperability advocate and contribute to a number of collaborative software development projects. I also do outreach to promote adoption of iPlant and GMOD tools and software, in particular the Generic Synteny Browser (GBrowse_syn), for which I teach at the GMOD summer schools.
More Information
- Click on a section title below to open:
- Research
- Evolutionary genetics
- Functional and comparative genomics
- Scientific software development
- Computational
- Object Oriented Perl; Perl/CGI, Perl/DBI
- JavaScript; AJAX; CSS
- MediaWiki and PHP
- SQL and database design
- Massive Parallel Computing with PBS and SGE
- Genome database mining (NCBI, Ensembl)
- Gene Ontology and KEGG pathway analysis
- Genome and Comparative Genome data visualization
- Phylogenetic inference methods
- Digital signal processing of DNA
- The Mediawiki extension that opens and closes these sections
Email: sheldon.mckay@gmail.com
- Active in the GMOD and iPlant consortia
- GBrowse_syn primary developer
- GBrowse_karyotype primary developer
- GBrowse core developer
- GBrowse PrimerDesigner plugin for inline design and selection of PCR primers
- GBrowse Spectrogram plugin for spectral analysis of DNA
- Annoying Popup_Balloons