Main Page

• GMOD Core (Chado database and tools)
  

  gmod-core

  the schema and tools to install it. [[[/chado_from_cvs From cvs]]]
  

  XORT

  a tool for loading and dumping chado-xml [[Download]]
  

  /gmodtools GMODTools

  a collection of tools for extracting data from a chado database and formatting it in common bulk download formats (GFF, Fasta, etc) [[[/chado_from_cvs Included in schema cvs]]]
  

• MOD website
  

  gmod-web/Turnkey

  a generic web front end for browsing database contents.
  

• Genome Editing and Visualization
  

  Apollo

  a Java application for viewing and editing genome annotations [[Download]]
  

  GBrowse

  a CGI application for displaying genome annotations [[Download]]
  

• Comparative Genomics
  

  Synbrowse

  a GBrowse based synteny viewer [[Download]]
  

  CMap

  a CGI application for displaying comparative maps [[Download]]
  

• Literature curation
  

  PubSearch

  a Java servlet web application for annotating genes from literature [[Download]]
  

  PubFetch

  a tool to facilitate literature collection for curators' use [[Download]]
  

  Textpresso

  a text mining system for scientific literature [[Download]]
  

• Database querying tools
  

  BioMart

  a query-oriented data management system [[Download]]