Difference between revisions of "JBrowse"
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JBrowse is a genome browser with an [[Glossary#AJAX|AJAX]]-based interface. JBrowse renders most tracks using client side JavaScript and [[Glossary#JSON|JSON]] as its data transfer format. JBrowse is the official successor to [[GBrowse]]. | JBrowse is a genome browser with an [[Glossary#AJAX|AJAX]]-based interface. JBrowse renders most tracks using client side JavaScript and [[Glossary#JSON|JSON]] as its data transfer format. JBrowse is the official successor to [[GBrowse]]. | ||
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* [[:Image:GBrowse3GMOD2008.pdf|Presentation]] by Ian Holmes at [[July 2008 GMOD Meeting]]. See the [[July 2008 GMOD Meeting#GBrowse 3.0|talk's summary for more]]. | * [[:Image:GBrowse3GMOD2008.pdf|Presentation]] by Ian Holmes at [[July 2008 GMOD Meeting]]. See the [[July 2008 GMOD Meeting#GBrowse 3.0|talk's summary for more]]. | ||
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== Downloads == | == Downloads == | ||
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* [mailto:mitch_skinner@berkeley.edu Mitch Skinner] | * [mailto:mitch_skinner@berkeley.edu Mitch Skinner] | ||
| + | [[Category:add UCSC 4/21 meeting presentation]] | ||
[[Category:GMOD Components]] | [[Category:GMOD Components]] | ||
[[Category:AJAX]] | [[Category:AJAX]] | ||
[[Category:JBrowse]] | [[Category:JBrowse]] | ||
Revision as of 20:55, 12 May 2010
Status
- Mature release
- Active development
- Active support
Resources
JBrowse is a genome browser with an AJAX-based interface. JBrowse renders most tracks using client side JavaScript and JSON as its data transfer format. JBrowse is the official successor to GBrowse.
Contents
Demo
Requirements
- From CPAN:
- BioPerl 1.6
- JSON
- JSON::XS (optional, for speed)
- libpng
Documentation
- JBrowse Home Page
- JBrowse Tutorial - Tutorial from 2009 GMOD Summer Schools
- JBrowse Quick Tutorial - JBrowse administration.
Presentations
- Talk at the April 21, 2010 UCSC genome browser group ("genecats") meeting.
- JBrowse: A next-generation genome browser - Presentation by Ian Holmes at the August 2009 GMOD Meeting. See the talk's summary for more.
- JBrowse - Presentation by Mitch Skinner at the January 2009 GMOD Meeting. See the talk's summary for more.
- Presentation by Ian Holmes at July 2008 GMOD Meeting. See the talk's summary for more.
Downloads
Screenshots
Demo screenshot from 2009/03/24, showing region of Drosophila melanogaster 2R.
Mailing List
- gmod-ajax@lists.sourceforge.net: Discussion of development, installation problems, etc.
- Subscribe to gmod-ajax
- gmod-ajax archives
