Difference between revisions of "JBrowse"
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== Documentation == | == Documentation == | ||
* [http://biowiki.org/view/JBrowse/WebHome JBrowse Home Page] | * [http://biowiki.org/view/JBrowse/WebHome JBrowse Home Page] | ||
| + | * [[JBrowse Tutorial]] - Tutorial from [[GMOD Summer School|2009 GMOD Summer Schools]] | ||
* [http://biowiki.org/view/JBrowse/QuickTutorial JBrowse Quick Tutorial] - JBrowse administration. | * [http://biowiki.org/view/JBrowse/QuickTutorial JBrowse Quick Tutorial] - JBrowse administration. | ||
Revision as of 23:22, 30 September 2009
JBrowse is a genome browser with an AJAX-based interface. JBrowse renders most tracks using client side JavaScript and JSON as its data transfer format. JBrowse is currently under development by the Ian Holmes Lab at UC Berkeley. It is expected to have a production release in 2009. Most development has been done by Mitch Skinner. JBrowse was formerly known as GBrowse 3. However, this name was changed to JBrowse to avoid confusion: JBrowse is an alternative to GBrowse, not a successor.
Contents
Demo
Requirements
- From CPAN:
- BioPerl 1.6
- JSON
- JSON::XS (optional, for speed)
- libpng
Documentation
- JBrowse Home Page
- JBrowse Tutorial - Tutorial from 2009 GMOD Summer Schools
- JBrowse Quick Tutorial - JBrowse administration.
Presentations
- Image:GBrowse3GMOD2008.pdf - Presentation by Ian Holmes at July 2008 GMOD Meeting. See the talk's summary for more.
- JBrowse - Presentation by Mitch Skinner at the January 2009 GMOD Meeting. See the talk's summary for more.
- Media:Aug2009JBrowse.pdf - Presentation by Ian Holmes at the August 2009 GMOD Meeting.
Downloads
Screenshots
Demo screenshot from 2009/03/24, showing region of Drosophila melanogaster 2R.
Mailing List
- gmod-ajax@lists.sourceforge.net: Discussion of development, installation problems, etc.
- Subscribe to gmod-ajax
- gmod-ajax archives
