This is the new server for GMOD.org. Please let us know if you notice anything weird while it's getting broken in.

Edit Tool data: Galaxy

Jump to: navigation, search

You do not have permission to edit this page, for the following reason:

The action you have requested is limited to users in the group: Users.


The Basics

Name:
Full name if name is an abbreviation, acronym, etc.

Status:
Current development:
Support status:
Tool classification or features:
Platform: If the tool

Brief description:
Open source:
Software licence:
Type of input data e.g. genomic sequence; taxonomic group; protein identifier; anatomy ontology, etc.

Input formats:
Output formats:
Programming language(s)
Intended usage
First public release
Use standard tool display template? yes


Files

Logo (file name) enter the name of the file on the GMOD wiki, e.g. CoolAppLogo.png

Screenshot(s)

Contact details

Contact email
Mailing list(s)


Links

The majority of links related to the tool should be added using the interface at the bottom of the page.

Download text If there is not a simple download URL for downloading the tool, please enter download instructions here. Download URLs can be entered in the 'Links' section below.

Download source code text If there is not a simple download URL for downloading the source code for the tool, please enter download instructions here. URLs can be entered in the 'Links' section below.


Materials

Publications
Presentations
Tutorials


Extra Textual Goodies

Any introductory text for users
Software prerequisites
Installation
Configuration
Documentation
Development team
Development status
Download/usage tracking
Logo info
See also Any extra information, links, etc.

Extra items for component box


Free text:

Links

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

Interoperable components

Upload a related file

Cancel

Retrieved from "http://gmod.org/wiki/Galaxy"
Facts about "Galaxy"RDF feed
Available on platformweb +
Has URLhttp://getgalaxy.org +, http://galaxyproject.org/ +, http://wiki.galaxyproject.org/ +, https://twitter.com/galaxyproject +, http://www.citeulike.org/group/16008/ +, http://www.mendeley.com/groups/1710745/ +, https://trello.com/board/galaxy-development-inbox/50686d0302dfa79d13d90c45 +, http://usegalaxy.org/ +, https://test.g2.bx.psu.edu/ +, http://wiki.galaxyproject.org/PublicGalaxyServers +, https://github.com/galaxyproject/galaxy/ +, https://docs.galaxyproject.org + and https://galaxyproject.github.io +
Has descriptionA fully-fledged, fully-supported instance +, Test instance + and Galaxy is an open, Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.
  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.

Galaxy is open source for all organizations. The public Galaxy server makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.


2016 Galaxy Community Conference

2016 Galaxy Community Conference[edit]

The 2016 Galaxy Community Conference (GCC2016) will be held June 25-29, at Indiana University in Bloomington, Indiana, United states, immediately before the June 2016 GMOD Meeting, also in Bloomington.

Galaxy Community Conferences are an opportunity to participate in presentations, discussions, poster sessions, lightning talks and breakouts, all about high-throughput biology and the tools that support it.  The conference also includes two days of training offering in-depth topic coverage across several concurrent sessions, and two days of hackathons.
016.iu.edu/hacks/ two days of hackathons]. +
Has development statusactive +
Has input formatRoadmaps +, Sequences +, ab1 +, affybatch +, afg +, axt +, bam +, bcf +, bed +, bedgraph +, bigbed +, bigwig +, bowtie_base_index +, bowtie_color_index +, chrint +, cisml +, csfasta +, csv +, eland +, elandmulti +, encodepeak +, eset +, fasta +, fastq +, fastqcssanger +, fastqillumina +, fastqsanger +, fastqsolexa +, fli +, fped +, fphe +, fqtoc +, gatk_dbsnp +, gatk_interval +, gatk_recal +, gatk_report +, gatk_tranche +, gd_indivs +, gd_ped +, gd_sap +, gd_snp +, GFF +, GFF3 +, gtf +, interval +, lav +, ldindep +, len +, linecount +, lped +, maf +, malist +, memexml +, nex +, nhx +, pbed +, phyloxml +, picard_interval_list +, pileup +, pphe +, qual454 +, qualillumina +, qualsolexa +, qualsolid +, sam +, scf +, sff +, snpmatrix +, snptest +, tabular +, taxonomy +, twobit +, txt +, vcf +, velvet +, wig + and xml +
Has licenceAcademic Free License 3.0 +
Has logoGalaxyLogoBigger.png +
Has output formatzillions! +
Has software maturity statusmature +
Has support statusactive +
Has titleGalaxy source code documentation +, Galaxy bibliography on Cite-U-Like +, Galaxy bibliography on Mendeley +, Galaxy Trello board +, List of public Galaxy servers + and List of Galaxy Produced Softawre +
Has topicGalaxy +
Is open sourceYes +
Link typedownload +, source code +, documentation +, website +, social media +, other +, public server +, demo server + and wild URL +
Release date2005 +
Tool functionality or classificationGenome Visualization and Editing +, Workflow Management +, Tool Integration + and Analysis +
Written in languagePython + and XML +
Has subobjectThis property is a special property in this wiki.Galaxy#http://getgalaxy.org +, Galaxy#http://galaxyproject.org/ +, Galaxy#http://wiki.galaxyproject.org/ +, Galaxy#https://twitter.com/galaxyproject +, Galaxy#http://www.citeulike.org/group/16008/ +, Galaxy#http://www.mendeley.com/groups/1710745/ +, Galaxy#https://trello.com/board/galaxy-development-inbox/50686d0302dfa79d13d90c45 +, Galaxy#http://usegalaxy.org/ +, Galaxy#https://test.g2.bx.psu.edu/ +, Galaxy#http://wiki.galaxyproject.org/PublicGalaxyServers +, Galaxy#https://github.com/galaxyproject/galaxy/ +, Galaxy#https://docs.galaxyproject.org + and Galaxy#https://galaxyproject.github.io +