GBrowse syn Scripts
From GMOD
Contents
aln2hit.pl
aln2hit.pl is a generic alignment data parser that will generate a tab-delimited file suitable for loading into the GBrowse_syn alignment database.
Example:
perl aln2hit -f clustalw -i my_alignments.aln >my_alignments.txt
| argument | default | description |
|---|---|---|
| f | clustalw | Specifies the alignment file format. MOst common formats recongnized by BioPerl's AlignIO parsers are supported, but use clustalw or fasta for best results. This argument is optional and |
| i | Specifies the name of the input alignment file |
- Take care to format the sequence IDs as described here.
