Difference between revisions of "GBrowse PAG 2009 Workshop"
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== Other GMOD Presentations and Meetings == | == Other GMOD Presentations and Meetings == | ||
| − | GMOD will have a [[PAG 2009|strong presence]] at PAG 2009, including a [[GBrowse_syn PAG 2009 Workshop|workshop | + | GMOD will have a [[PAG 2009|strong presence]] at PAG 2009, including a [[GBrowse_syn PAG 2009 Workshop|workshop on GBrowse_syn]]. See the [[PAG 2009|list of GMOD related PAG 2009 presentations]] for more. |
The [[January 2009 GMOD Meeting]] will be held in San Diego, immediately after PAG 2009. If you want to meet with GMOD users and developers and learn more about GMOD, then [[January 2009 GMOD Meeting|please consider attending]]. | The [[January 2009 GMOD Meeting]] will be held in San Diego, immediately after PAG 2009. If you want to meet with GMOD users and developers and learn more about GMOD, then [[January 2009 GMOD Meeting|please consider attending]]. | ||
[[Category:Education and Outreach]] | [[Category:Education and Outreach]] | ||
Revision as of 23:16, 14 November 2008
| PAG 2009 | http://www.intl-pag.org/}} | The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse January 11, 2009 Plant and Animal Genome Conference San Diego, California, USA |
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This page provides additional information about the GBrowse workshop at the Plant and Animal Genome XVII Conference (PAG 2009) being held in San Diego on January 10-14, 2009:
If you are planning on or thinking about attending this workshop, please sign up for the workshop's mailing list. We will use the mailing list to notify participants when files are available for download.
Contents
Overview
This will be a hands-on tutorial on how to install and use the GBrowse genome browser.
Tutorial Level
Beginner to Intermediate. Students should be comfortable performing simple system administration tasks like stopping and starting services.
Students who wish to use their own computer should preinstall the prerequisites described in the GBrowse installation notes, including Perl, Apache, MySQL and (for Unix) BioPerl.
Intended Audience
GBrowse is sufficiently easy to install that a biologist can easily set up and configure a GBrowse server after the initial hurdles of learning about configuration options and file formats are overcome. This class is intended to help them over those hurdles.
Outline
- The Basics
- The Data File
- Defining Tracks
- Searching for Named Features
- Adding Descriptions to a Feature
- Showing multi-segmented features
- Using Aggregators
- Showing Protein Coding Genes
- Showing the Reading Frame
- Creating Custom Aggregators
- Showing Quantitative Data
- Displaying DNA and 3-frame translations
- Features added in latest release, including draggable and collapsible tracks, and popup balloons
Workshop Instructor
- Scott Cain, GMOD Project Coordinator, Ontario Institute for Cancer Research
Mailing List
If you are planning on or thinking about attending this workshop, please sign up for the workshop's mailing list. Announcements relevant to the course, such as when data files are available for download, will be sent to the list.
Datasets
Example datasets will be posted prior to the conference.
See Also
GMOD will have a strong presence at PAG 2009, including a workshop on GBrowse_syn, a synteny viewer built on GBrowse. See the list of GMOD related PAG 2009 presentations for more.
Other GMOD Presentations and Meetings
GMOD will have a strong presence at PAG 2009, including a workshop on GBrowse_syn. See the list of GMOD related PAG 2009 presentations for more.
The January 2009 GMOD Meeting will be held in San Diego, immediately after PAG 2009. If you want to meet with GMOD users and developers and learn more about GMOD, then please consider attending.
