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Difference between revisions of "Web-apollo-meeting-2011-1-6"
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== Status reports == | == Status reports == | ||
* Gregg | * Gregg | ||
| − | + | ** Incorporation of CDS/UTR information to get it into the display. Not yet finished, but will be within the next few days. | |
| − | ** Incorporation of CDS/UTR information to get it into the display | + | ** Caching functionality (firebug report too?): Has deprecated as a priority as current solution is adequate. Speed is |
| − | ** Caching functionality (firebug report too?) | + | ** Shifting focus to the user interface, getting up to speed now. |
| − | ** | + | ** Adding some examples of the different UCSC data types |
| − | ** | + | |
* Chris | * Chris | ||
** JBrowse installation | ** JBrowse installation | ||
| + | ** Has anyone tried (using config file) view data from multiple sources in a single JBrowse instance? | ||
| + | *** Not yet ready, but would like it soon. Will work on it this week. | ||
* Chris E. | * Chris E. | ||
| − | ** Bovine assembly and annotation status | + | ** Bovine assembly and annotation status: it's now out and available at NCBI (Baylor and UMaryland, 2 different assemblies). They use whatever assembly Ensembl uses and lift it over, and this is out soon. |
| − | ** Honeybee | + | ** Trellis can handle DAS1 and get it into JBrowse, but still have the multiple source issue |
| + | ** Honeybee: another month before compute results are available. UCSC is still on 2.0, but most current is 4.0. | ||
| + | ** A.I. - Suzi to contact them to ask about it, Gregg to schedule a visit. | ||
* Ed | * Ed | ||
** Current version of server features | ** Current version of server features | ||
| + | ** Added some new editing features | ||
| + | ** Working on Chado write-back, should be done in the next week or two | ||
* Mitch | * Mitch | ||
** Discussion of [http://www.codecommit.com/blog/java/understanding-and-applying-operational-transformation Operational Transformation], [http://www.waveprotocol.org/whitepapers/operational-transform wave protocol], and [http://code.google.com/p/wave-protocol/source/browse/src/org/waveprotocol/wave/model/document/operation/algorithm/Transformer.java the code] | ** Discussion of [http://www.codecommit.com/blog/java/understanding-and-applying-operational-transformation Operational Transformation], [http://www.waveprotocol.org/whitepapers/operational-transform wave protocol], and [http://code.google.com/p/wave-protocol/source/browse/src/org/waveprotocol/wave/model/document/operation/algorithm/Transformer.java the code] | ||
| + | ** Having trouble with the release, but thinks he is on the last bug and will release ASAP. | ||
| + | ** Owes an email to CC | ||
== Topics == | == Topics == | ||
| − | * John may be visiting next week on the 10th, we need to meet with him | + | * John may be visiting next week on the 10th, we need to meet with him (Suzi to ping him to find out whether it's happening) |
| − | + | ||
| − | + | ||
* Next meeting will be January 13, 2011 | * Next meeting will be January 13, 2011 | ||
| + | |||
| + | == Questions for John == | ||
| + | * How well does the wave technology scale? Can it handle a genome sized document? | ||
[[Category:Apollo]] | [[Category:Apollo]] | ||
Latest revision as of 23:24, 6 January 2011
Status reports
- Gregg
- Incorporation of CDS/UTR information to get it into the display. Not yet finished, but will be within the next few days.
- Caching functionality (firebug report too?): Has deprecated as a priority as current solution is adequate. Speed is
- Shifting focus to the user interface, getting up to speed now.
- Adding some examples of the different UCSC data types
- Chris
- JBrowse installation
- Has anyone tried (using config file) view data from multiple sources in a single JBrowse instance?
- Not yet ready, but would like it soon. Will work on it this week.
- Chris E.
- Bovine assembly and annotation status: it's now out and available at NCBI (Baylor and UMaryland, 2 different assemblies). They use whatever assembly Ensembl uses and lift it over, and this is out soon.
- Trellis can handle DAS1 and get it into JBrowse, but still have the multiple source issue
- Honeybee: another month before compute results are available. UCSC is still on 2.0, but most current is 4.0.
- A.I. - Suzi to contact them to ask about it, Gregg to schedule a visit.
- Ed
- Current version of server features
- Added some new editing features
- Working on Chado write-back, should be done in the next week or two
- Mitch
- Discussion of Operational Transformation, wave protocol, and the code
- Having trouble with the release, but thinks he is on the last bug and will release ASAP.
- Owes an email to CC
Topics
- John may be visiting next week on the 10th, we need to meet with him (Suzi to ping him to find out whether it's happening)
- Next meeting will be January 13, 2011
Questions for John
- How well does the wave technology scale? Can it handle a genome sized document?
