Web-apollo-meeting-2011-1-6
Status reports
- Gregg
- Incorporation of CDS/UTR information to get it into the display. Not
yet finished, but will be within the next few days.
- Caching functionality (firebug report too?): Has deprecated as a
priority as current solution is adequate. Speed is
- Shifting focus to the user interface, getting up to speed now.
- Adding some examples of the different UCSC data types
- Chris
- JBrowse installation
- Has anyone tried (using config file) view data from multiple sources
in a single JBrowse instance?
- Not yet ready, but would like it soon. Will work on it this week.
- Chris E.
- Bovine assembly and annotation status: it’s now out and available at
NCBI (Baylor and UMaryland, 2 different assemblies). They use
whatever assembly Ensembl uses and lift it over, and this is out
soon.
- Trellis can handle DAS1 and get it into JBrowse, but still have the
multiple source issue
- Honeybee: another month before compute results are available. UCSC
is still on 2.0, but most current is 4.0.
- A.I. - Suzi to contact them to ask about it, Gregg to schedule a
visit.
- Ed
- Current version of server features
- Added some new editing features
- Working on Chado write-back, should be done in the next week or two
- Mitch
Topics
- John may be visiting next week on the 10th, we need to meet with him
(Suzi to ping him to find out whether it’s happening)
- Next meeting will be January 13, 2011
Questions for John
- How well does the wave technology scale? Can it handle a genome sized
document?
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