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Difference between revisions of "Web-apollo-meeting-2010-12-16"
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** Also looking at functionality of caching to not bother rechecking until a certain threshold of time expires (somewhat working now). Code is checked in. Struggling with firebug to get information needed to debug. | ** Also looking at functionality of caching to not bother rechecking until a certain threshold of time expires (somewhat working now). Code is checked in. Struggling with firebug to get information needed to debug. | ||
* Chris | * Chris | ||
| − | ** Some problems installing JBrowse using bam | + | ** Some problems installing JBrowse using bam |
| + | ** Will have new bovine assembly in January | ||
| + | ** (Gregg) says we can now (via config file) view data from multiple sources in a single JBrowse instance. Next version, would allow a set of URLs be used to specify tracks. In longer term is to make this dynamic. | ||
| + | ** Honeybee has funding for a whole new consortium, plus 2 bumblebees. This is a complete pass reannotation. | ||
| + | ** Honeybee includes a lot for RNAseq data as well. | ||
| + | ** Editing functionality JBrowse is higher priority than viewing data from multiple sources | ||
| + | * Next meeting will be January 6, 2011 | ||
[[Category:Webapollo]] | [[Category:Webapollo]] | ||
[[Category: Webapollo-minutes]] | [[Category: Webapollo-minutes]] | ||
Latest revision as of 23:02, 16 December 2010
Agenda items
Minutes
- Review of action items
- More data types in Trellis
- Gregg has create the spreadsheet with all of these
- UCSC genome database: track counts by type per genome assembly
- Only high implementation priority to add are rmsk and wig
- Gregg
- Looking at different data types in terms of difficulty and priority (as above)
- Needs to incorporate CDS/UTR information to get it into the display (bit of an oversight)
- Also looking at functionality of caching to not bother rechecking until a certain threshold of time expires (somewhat working now). Code is checked in. Struggling with firebug to get information needed to debug.
- Chris
- Some problems installing JBrowse using bam
- Will have new bovine assembly in January
- (Gregg) says we can now (via config file) view data from multiple sources in a single JBrowse instance. Next version, would allow a set of URLs be used to specify tracks. In longer term is to make this dynamic.
- Honeybee has funding for a whole new consortium, plus 2 bumblebees. This is a complete pass reannotation.
- Honeybee includes a lot for RNAseq data as well.
- Editing functionality JBrowse is higher priority than viewing data from multiple sources
- Next meeting will be January 6, 2011
