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Difference between revisions of "January 2007 GMOD Meeting"

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m (New page: The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off (with...)
 
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The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off (with the agenda here).
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GMOD Generic Model Organism Database
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 +
==Meeting 9==
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January 18-19, San Diego CA.
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The January 2007 [[Meetings|GMOD meeting]] was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off.
 +
 
 +
==MOD User Interface Caucus==
 +
 
 +
Report from the UI Caucus: [[MOD_Face_Summary|MOD Interface Summary]]
 +
 
 +
==GMOD Middleware==
 +
 
 +
Reports from the Middleware Meeting: [[GMOD Middleware]]
 +
 
 +
 
 +
===Agenda===
 +
 
 +
<ul>
 +
<li>9:00 AM - 9:05 AM <b>Introduction, Eric Just</b></li>
 +
<li>9:05 AM - 9:30 AM <b>Object/relational Mapping Principles, Sohel Merchant</b></li>
 +
<li>9:30 AM - 9:55 AM <b>XORT, Pinglei Zhou</b></li>
 +
<li>9:55 AM - 10:20 AM <b>Chado::AutoDBI, Brian O'Connor</b></li>
 +
<li>10:20 AM - 10:35 AM <b>Coffee Break</b></li>
 +
<li>10:35 AM - 11:00 AM <b>Modware, Eric Just</b></li>
 +
<li>11:00 AM - 11:20 AM <b>GBrowse (DasI) Adaptor, Scott Cain</b></li>
 +
<li>11:20 AM - 11:45 AM <b>iBatis, Jeff Bowes</b></li>
 +
<li>11:45 AM - 1:15 PM <b>LUNCH</b></li>
 +
<li>1:15 PM - 1:40 PM <b>Hibernate, Robert Bruggner</b></li>
 +
<li>1:40 PM - 2:05 PM <b>PSU Chado Interface, Chinmay Patel</b></li>
 +
<li>2:05 PM - 2:20 PM <b>Coffee Break</b></li>
 +
<li>2:20 PM - 2:45 PM <b>GUS Web Development Kit (not GUS-specific), Steve Fischer</b></li>
 +
<li>2:45 PM - 3:10 PM <b>InterMine/FlyMine data warehousing, Gos Micklem</b></li>
 +
<li>3:10 PM - 4:30 PM <b>Wrap up (Eric Just, Scott Cain, Brian Osborne), discussion</b></li>
 +
</ul>
 +
 
 +
==Attendees==
  
 
The meeting was well attended, with about 60 people from a large variety of organizations:
 
The meeting was well attended, with about 60 people from a large variety of organizations:
  
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Peter Karp EcoCyc
+
{| class="wikitable sortable"
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Richard Bruskiewich IRRI/IRIS + Generation Challenge Programme
+
|-
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Kate Rosenbloom UCSC Genome Bioinformatics Group
+
! Name
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Zhiliang Hu Iowa State University
+
! Organization
−
Robert Wilson FlyBase
+
|-
−
Sohel Merchant DictyBase
+
| Peter Karp
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Chinmay Patel GeneDB
+
| EcoCyc
−
pinglei zhou FlyBase
+
|-
−
Prachi Shah Candida Genome Database
+
| Richard Bruskiewich
−
Vivien Bonazzi NHGRI
+
| IRRI/IRIS + Generation Challenge Programme
−
Jay Sundaram TIGR
+
|-
−
Peter Karp EcoCyc
+
| Kate Rosenbloom
−
Ben Faga GMOD
+
| UCSC Genome Bioinformatics Group
−
George Kowalski RGD
+
|-
−
Dave Matthews GrainGenes
+
| Zhiliang Hu
−
Brian Osborne NESCent
+
| Iowa State University
−
Eric Just DictyBase
+
|-
−
Susan Bromberg RGD
+
| Robert Wilson
−
Eva Huala TAIR
+
| [[:Category:FlyBase|FlyBase]]
−
Allen GMOD
+
|-
−
Sheldon McKay WormBase
+
| Sohel Merchant
−
Todd Harris WormBase
+
| [[:Category:DictyBase|DictyBase]]
−
Kim Pruitt NCBI
+
|-
−
Karla Gendler ChromDB (www.chromdb.org)
+
| Chinmay Patel
−
Donghui Li TAIR
+
| GeneDB
−
Gos Micklem FlyMine/InterMine
+
|-
−
Ning Wei TAMU
+
| pinglei zhou
−
Brian Osborne NESCent
+
| [[:Category:FlyBase|FlyBase]]
−
Sofia Robb PlanariaDB
+
|-
−
steve fischer GUS/PlasmoDB
+
| Prachi Shah
−
Brian O'Connor UCLA
+
| Candida Genome Database
−
Arek Kasprzyk EBI
+
|-
−
Robert Bruggner VectorBase
+
| Vivien Bonazzi
−
Susan Bridges AgBase
+
| NHGRI
−
Lincoln Stein WormBase
+
|-
−
Madeline A. Crosby FlyBase
+
| Jay Sundaram
−
Robert Buels SGN
+
| TIGR
−
Dianna Fisk SGD
+
|-
−
Sohel Merchant DictyBase
+
| [[User:Faga|Ben Faga]]
−
Bob Muller TAIR
+
| GMOD
−
Suzanne Paley EcoCyc
+
|-
−
Hanni Salih BovineGenome.org
+
| George Kowalski
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Peili Zhang FlyBase
+
| [[:Category:RGD|RGD]]
−
Eric Ross PlanariaDB
+
|-
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Manuel J Torres Plant Genome Mapping Lab, UGA
+
| Dave Matthews
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James Reecy Animalgenome.org
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| GrainGenes
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Eileen Kraemer ApiDB
+
|-
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Brian O'Connor UCLA
+
| Brian Osborne
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Jim Hu EcoliHub/EcoliWiki
+
| NESCent
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Justin Reese BeeBase, Bovine Genome Database
+
|-
−
Victor Strelets FlyBase
+
| Eric Just
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Josh Goodman FlyBase
+
| [[:Category:DictyBase|DictyBase]]
−
Christine Elsik BeeBase, Bovine Genome Database
+
|-
−
Anand Venkatraman BeeBase
+
| Susan Bromberg
−
Haiyan Zhang FlyBase
+
| [[:Category:RGD|RGD]]
−
Don Gilbert wFleaBase, DroSpeGe
+
|-
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David Adelson bovinegenome.org
+
| Eva Huala
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Ceri Van Slyke ZFIN
+
| [[:Category:TAIR|TAIR]]
−
Joshua Orvis TIGR
+
|-
−
Kathleen Falls FlyBase
+
| Allen
−
Jeff Bowes XenBase
+
| GMOD
−
Susan Bello MGI
+
|-
−
Joel Richardson MGI
+
| [[User:Mckays|Sheldon McKay]]
−
Scott Cain GMOD
+
| [[:Category:WormBase|WormBase]]
 +
|-
 +
| [[User:Tharris|Todd Harris]]
 +
| [[:Category:WormBase|WormBase]]
 +
|-
 +
| Kim Pruitt
 +
| NCBI
 +
|-
 +
| Karla Gendler
 +
| [http://www.chromdb.org ChromDB]
 +
|-
 +
| Donghui Li
 +
| [[:Category:TAIR|TAIR]]
 +
|-
 +
| Gos Micklem
 +
| FlyMine/[[InterMine]]
 +
|-
 +
| Ning Wei
 +
| TAMU
 +
|-
 +
| Sofia Robb
 +
| PlanariaDB
 +
|-
 +
| steve fischer
 +
| GUS/PlasmoDB
 +
|-
 +
| Brian O'Connor
 +
| UCLA
 +
|-
 +
| Arek Kasprzyk
 +
| EBI
 +
|-
 +
| Robert Bruggner
 +
| VectorBase
 +
|-
 +
| Susan Bridges
 +
| AgBase
 +
|-
 +
| [[User:Lstein|Lincoln Stein]]
 +
| [[:Category:WormBase|WormBase]]
 +
|-
 +
| Madeline A. Crosby
 +
| [[:Category:FlyBase|FlyBase]]
 +
|-
 +
| [[User:RobertBuels|Robert Buels]]
 +
| [[:Category:SGN|SGN]]
 +
|-
 +
| Dianna Fisk
 +
| [[:Category:SGD|SGD]]
 +
|-
 +
| Bob Muller
 +
| [[:Category:TAIR|TAIR]]
 +
|-
 +
| Suzanne Paley
 +
| EcoCyc
 +
|-
 +
| Hanni Salih
 +
| BovineGenome.org
 +
|-
 +
| Peili Zhang
 +
| [[:Category:FlyBase|FlyBase]]
 +
|-
 +
| Eric Ross
 +
| PlanariaDB
 +
|-
 +
| Manuel J Torres
 +
| Plant Genome Mapping Lab, UGA
 +
|-
 +
| James Reecy
 +
| Animalgenome.org
 +
|-
 +
| Eileen Kraemer
 +
| ApiDB
 +
|-
 +
| [[User:JimHu|Jim Hu]]
 +
| EcoliHub/EcoliWiki
 +
|-
 +
| Justin Reese
 +
| BeeBase, Bovine Genome Database
 +
|-
 +
| Victor Strelets
 +
| [[:Category:FlyBase|FlyBase]]
 +
|-
 +
| [[User:Jogoodma|Josh Goodman]]
 +
| [[:Category:FlyBase|FlyBase]]
 +
|-
 +
| Christine Elsik
 +
| BeeBase, Bovine Genome Database
 +
|-
 +
| Anand Venkatraman
 +
| BeeBase
 +
|-
 +
| Haiyan Zhang
 +
| [[:Category:FlyBase|FlyBase]]
 +
|-
 +
| [[User:Dongilbert|Don Gilbert]]
 +
| wFleaBase, DroSpeGe
 +
|-
 +
| David Adelson
 +
| bovinegenome.org
 +
|-
 +
| Ceri Van Slyke
 +
| ZFIN
 +
|-
 +
| [[User:Jorvis|Joshua Orvis]]
 +
| TIGR
 +
|-
 +
| Kathleen Falls
 +
| [[:Category:FlyBase|FlyBase]]
 +
|-
 +
| Jeff Bowes
 +
| XenBase
 +
|-
 +
| Susan Bello
 +
| [[:Category:MGI|MGI]]
 +
|-
 +
| Joel Richardson
 +
| [[:Category:MGI|MGI]]
 +
|-
 +
| [[User:Scott|Scott Cain]]
 +
| GMOD
 +
|}
  
 
[[Category:Meetings]]
 
[[Category:Meetings]]

Latest revision as of 22:33, 10 September 2009

GMOD Generic Model Organism Database

Meeting 9

January 18-19, San Diego CA.

The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off.

MOD User Interface Caucus

Report from the UI Caucus: MOD Interface Summary

GMOD Middleware

Reports from the Middleware Meeting: GMOD Middleware


Agenda

  • 9:00 AM - 9:05 AM Introduction, Eric Just
  • 9:05 AM - 9:30 AM Object/relational Mapping Principles, Sohel Merchant
  • 9:30 AM - 9:55 AM XORT, Pinglei Zhou
  • 9:55 AM - 10:20 AM Chado::AutoDBI, Brian O'Connor
  • 10:20 AM - 10:35 AM Coffee Break
  • 10:35 AM - 11:00 AM Modware, Eric Just
  • 11:00 AM - 11:20 AM GBrowse (DasI) Adaptor, Scott Cain
  • 11:20 AM - 11:45 AM iBatis, Jeff Bowes
  • 11:45 AM - 1:15 PM LUNCH
  • 1:15 PM - 1:40 PM Hibernate, Robert Bruggner
  • 1:40 PM - 2:05 PM PSU Chado Interface, Chinmay Patel
  • 2:05 PM - 2:20 PM Coffee Break
  • 2:20 PM - 2:45 PM GUS Web Development Kit (not GUS-specific), Steve Fischer
  • 2:45 PM - 3:10 PM InterMine/FlyMine data warehousing, Gos Micklem
  • 3:10 PM - 4:30 PM Wrap up (Eric Just, Scott Cain, Brian Osborne), discussion

Attendees

The meeting was well attended, with about 60 people from a large variety of organizations:

Name Organization
Peter Karp EcoCyc
Richard Bruskiewich IRRI/IRIS + Generation Challenge Programme
Kate Rosenbloom UCSC Genome Bioinformatics Group
Zhiliang Hu Iowa State University
Robert Wilson FlyBase
Sohel Merchant DictyBase
Chinmay Patel GeneDB
pinglei zhou FlyBase
Prachi Shah Candida Genome Database
Vivien Bonazzi NHGRI
Jay Sundaram TIGR
Ben Faga GMOD
George Kowalski RGD
Dave Matthews GrainGenes
Brian Osborne NESCent
Eric Just DictyBase
Susan Bromberg RGD
Eva Huala TAIR
Allen GMOD
Sheldon McKay WormBase
Todd Harris WormBase
Kim Pruitt NCBI
Karla Gendler ChromDB
Donghui Li TAIR
Gos Micklem FlyMine/InterMine
Ning Wei TAMU
Sofia Robb PlanariaDB
steve fischer GUS/PlasmoDB
Brian O'Connor UCLA
Arek Kasprzyk EBI
Robert Bruggner VectorBase
Susan Bridges AgBase
Lincoln Stein WormBase
Madeline A. Crosby FlyBase
Robert Buels SGN
Dianna Fisk SGD
Bob Muller TAIR
Suzanne Paley EcoCyc
Hanni Salih BovineGenome.org
Peili Zhang FlyBase
Eric Ross PlanariaDB
Manuel J Torres Plant Genome Mapping Lab, UGA
James Reecy Animalgenome.org
Eileen Kraemer ApiDB
Jim Hu EcoliHub/EcoliWiki
Justin Reese BeeBase, Bovine Genome Database
Victor Strelets FlyBase
Josh Goodman FlyBase
Christine Elsik BeeBase, Bovine Genome Database
Anand Venkatraman BeeBase
Haiyan Zhang FlyBase
Don Gilbert wFleaBase, DroSpeGe
David Adelson bovinegenome.org
Ceri Van Slyke ZFIN
Joshua Orvis TIGR
Kathleen Falls FlyBase
Jeff Bowes XenBase
Susan Bello MGI
Joel Richardson MGI
Scott Cain GMOD
Retrieved from "http://gmod.org/mediawiki/index.php?title=January_2007_GMOD_Meeting&oldid=9269"