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January 2007 GMOD Meeting

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GMOD Generic Model Organism Database

Meeting 9

January 18-19, San Diego CA.

The January 2007 GMOD meeting was held at the Town and Country Hotel in San Diego. The meeting was divided into two parts: a MOD user interface caucus and a Chado Middleware Bake Off.

MOD User Interface Caucus

Report from the UI Caucus: MOD Interface Summary

GMOD Middleware

Reports from the Middleware Meeting: GMOD Middleware


Agenda

  • 9:00 AM - 9:05 AM Introduction, Eric Just
  • 9:05 AM - 9:30 AM Object/relational Mapping Principles, Sohel Merchant
  • 9:30 AM - 9:55 AM XORT, Pinglei Zhou
  • 9:55 AM - 10:20 AM Chado::AutoDBI, Brian O'Connor
  • 10:20 AM - 10:35 AM Coffee Break
  • 10:35 AM - 11:00 AM Modware, Eric Just
  • 11:00 AM - 11:20 AM GBrowse (DasI) Adaptor, Scott Cain
  • 11:20 AM - 11:45 AM iBatis, Jeff Bowes
  • 11:45 AM - 1:15 PM LUNCH
  • 1:15 PM - 1:40 PM Hibernate, Robert Bruggner
  • 1:40 PM - 2:05 PM PSU Chado Interface, Chinmay Patel
  • 2:05 PM - 2:20 PM Coffee Break
  • 2:20 PM - 2:45 PM GUS Web Development Kit (not GUS-specific), Steve Fischer
  • 2:45 PM - 3:10 PM InterMine/FlyMine data warehousing, Gos Micklem
  • 3:10 PM - 4:30 PM Wrap up (Eric Just, Scott Cain, Brian Osborne), discussion

Attendees

The meeting was well attended, with about 60 people from a large variety of organizations:

Name Organization
Peter Karp EcoCyc
Richard Bruskiewich IRRI/IRIS + Generation Challenge Programme
Kate Rosenbloom UCSC Genome Bioinformatics Group
Zhiliang Hu Iowa State University
Robert Wilson FlyBase
Sohel Merchant DictyBase
Chinmay Patel GeneDB
pinglei zhou FlyBase
Prachi Shah Candida Genome Database
Vivien Bonazzi NHGRI
Jay Sundaram TIGR
Ben Faga GMOD
George Kowalski RGD
Dave Matthews GrainGenes
Brian Osborne NESCent
Eric Just DictyBase
Susan Bromberg RGD
Eva Huala TAIR
Allen GMOD
Sheldon McKay WormBase
Todd Harris WormBase
Kim Pruitt NCBI
Karla Gendler ChromDB
Donghui Li TAIR
Gos Micklem FlyMine/InterMine
Ning Wei TAMU
Sofia Robb PlanariaDB
steve fischer GUS/PlasmoDB
Brian O'Connor UCLA
Arek Kasprzyk EBI
Robert Bruggner VectorBase
Susan Bridges AgBase
Lincoln Stein WormBase
Madeline A. Crosby FlyBase
Robert Buels SGN
Dianna Fisk SGD
Bob Muller TAIR
Suzanne Paley EcoCyc
Hanni Salih BovineGenome.org
Peili Zhang FlyBase
Eric Ross PlanariaDB
Manuel J Torres Plant Genome Mapping Lab, UGA
James Reecy Animalgenome.org
Eileen Kraemer ApiDB
Jim Hu EcoliHub/EcoliWiki
Justin Reese BeeBase, Bovine Genome Database
Victor Strelets FlyBase
Josh Goodman FlyBase
Christine Elsik BeeBase, Bovine Genome Database
Anand Venkatraman BeeBase
Haiyan Zhang FlyBase
Don Gilbert wFleaBase, DroSpeGe
David Adelson bovinegenome.org
Ceri Van Slyke ZFIN
Joshua Orvis TIGR
Kathleen Falls FlyBase
Jeff Bowes XenBase
Susan Bello MGI
Joel Richardson MGI
Scott Cain GMOD