NOTE: We are working on migrating this site away from MediaWiki, so editing pages will be disabled for now.

Difference between revisions of "Arthropod Genomics 2011/Genome Project 101 Workshop"

From GMOD
Jump to: navigation, search
m (→‎Installed Prerequisite Software)
m (→‎Installed Prerequisite Software)
Line 63: Line 63:
 
| Scripts used by Galaxy
 
| Scripts used by Galaxy
 
|}
 
|}
 +
 +
== GMOD Components ==
 +
 +
=== [[Galaxy]] ===
 +
 +
<pre class="enter">
 +
cd ~/Documents
 +
mkdir work
 +
cd work
 +
hg clone http://bitbucket.org/galaxy/galaxy-dist
 +
cd galaxy-dist
 +
sh run.sh
 +
</pre>
 +
 +
And Galaxy is now installed and running.

Revision as of 21:37, 2 June 2011

Under Construction

This page or section is under construction.

This page will be used for the Genome 101 Workshop at Arthropod Genomics 2011.

VMware Image

A VMware image will be made available to participants of the workshop. We will use this image during the workshop

System Configuration

This section attempts to track what we did to create the VMware image

Operating System Ubuntu 11.04, 64 bit client. This is a popular Linux distribution
Memory 2 GB. If you run this on a system that has 2 gigabytes or less of memory, please decrease this number
Disk 80 GB. This is allocated 2 GB at a time, as needed, but VMware.
Networking NAT
Username gmod
Password

Installed Prerequisite Software

GMOD components have a variety of prerequisite software that needs to be installed. Here is a list of what was installed so we could install and run GMOD software.

Software How Comments
Mercurial sudo apt-get install mercurial Revision control system used by Galaxy
Microsoft TrueType core fonts sudo apt-get install ttf-mscorefonts-installer Used by Galaxy.
python-dev sudo apt-get install python-dev Used in Galaxy.
python-setuptools sudo apt-get install python-setuptools Used in Galaxy.
python-pip sudo apt-get install python-pip Used in Galaxy.
bx-python scripts sudo pip install bx-python Scripts used by Galaxy

GMOD Components

Galaxy

cd ~/Documents
mkdir work
cd work
hg clone http://bitbucket.org/galaxy/galaxy-dist
cd galaxy-dist
sh run.sh

And Galaxy is now installed and running.

Retrieved from "http://gmod.org/mediawiki/index.php?title=Arthropod_Genomics_2011/Genome_Project_101_Workshop&oldid=17891"