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Difference between revisions of "Arthropod Genomics 2011/Genome Project 101 Workshop"
From GMOD
m (→System Log) |
m (→Installed Prerequisite Software) |
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| Line 47: | Line 47: | ||
| Used by [[Galaxy]]. | | Used by [[Galaxy]]. | ||
|- | |- | ||
| − | | python-dev | + | | python-dev |
| − | | <tt>sudo apt-get install python-dev </tt> | + | | <tt class="enter">sudo apt-get install python-dev </tt> |
| Used in [[Galaxy]]. | | Used in [[Galaxy]]. | ||
|- | |- | ||
| python-setuptools | | python-setuptools | ||
| − | | <tt>sudo apt-get install python-setuptools</tt> | + | | <tt class="enter">sudo apt-get install python-setuptools</tt> |
| Used in [[Galaxy]]. | | Used in [[Galaxy]]. | ||
|- | |- | ||
| python-pip | | python-pip | ||
| − | | <tt>sudo apt-get install python-pip</tt> | + | | <tt class="enter">sudo apt-get install python-pip</tt> |
| Used in [[Galaxy]]. | | Used in [[Galaxy]]. | ||
|- | |- | ||
| − | | bx-python scripts | + | | bx-python scripts |
| − | | <tt>sudo pip install bx-python</tt> | + | | <tt class="enter">sudo pip install bx-python</tt> |
| Scripts used by Galaxy | | Scripts used by Galaxy | ||
|} | |} | ||
Revision as of 21:31, 2 June 2011
This page or section is under construction.
This page will be used for the Genome 101 Workshop at Arthropod Genomics 2011.
VMware Image
A VMware image will be made available to participants of the workshop. We will use this image during the workshop
System Configuration
This section attempts to track what we did to create the VMware image
| Operating System | Ubuntu 11.04, 64 bit client. This is a popular Linux distribution |
|---|---|
| Memory | 2 GB. If you run this on a system that has 2 gigabytes or less of memory, please decrease this number |
| Disk | 80 GB. This is allocated 2 GB at a time, as needed, but VMware. |
| Networking | NAT |
| Username | gmod |
| Password |
Installed Prerequisite Software
GMOD components have a variety of prerequisite software that needs to be installed. Here is a list of what was installed so we could install and run GMOD software.
| Software | How | Comments |
|---|---|---|
| Mercurial | sudo apt-get install mercurial | Revision control system used by Galaxy |
| Microsoft TrueType core fonts | sudo apt-get install ttf-mscorefonts-installer | Used by Galaxy. |
| python-dev | sudo apt-get install python-dev | Used in Galaxy. |
| python-setuptools | sudo apt-get install python-setuptools | Used in Galaxy. |
| python-pip | sudo apt-get install python-pip | Used in Galaxy. |
| bx-python scripts | sudo pip install bx-python | Scripts used by Galaxy |
