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Difference between revisions of "Arthropod Genomics 2011/Genome Project 101 Workshop"
From GMOD
m (Created page with "{{UnderConstruction|This page will be used for the '''Genome 101 Workshop''' at Arthropod Genomics 2011.}} = VMware Image = A VMware image will be made available to par…") |
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A [[VMware]] image will be made available to participants of the workshop. We will use this image during the workshop | A [[VMware]] image will be made available to participants of the workshop. We will use this image during the workshop | ||
| − | == System | + | == System Configuration == |
This section attempts to track what we did to create the VMware image | This section attempts to track what we did to create the VMware image | ||
{| class="wikitable" | {| class="wikitable" | ||
| − | ! Operating System | + | ! Operating System |
| Ubuntu 11.04, 64 bit client. This is a popular Linux distribution | | Ubuntu 11.04, 64 bit client. This is a popular Linux distribution | ||
|- | |- | ||
| Line 18: | Line 18: | ||
! Disk | ! Disk | ||
| 80 GB. This is allocated 2 GB at a time, as needed, but VMware. | | 80 GB. This is allocated 2 GB at a time, as needed, but VMware. | ||
| + | |- | ||
| + | ! Networking | ||
| + | | NAT | ||
|- | |- | ||
! Username | ! Username | ||
| Line 23: | Line 26: | ||
|- | |- | ||
! Password | ! Password | ||
| − | | | + | | |
|- | |- | ||
|} | |} | ||
| − | + | == Installed Prerequisite Software == | |
GMOD components have a variety of prerequisite software that needs to be installed. Here is a list of what was installed so we could install and run GMOD software. | GMOD components have a variety of prerequisite software that needs to be installed. Here is a list of what was installed so we could install and run GMOD software. | ||
| − | {| class="wikitable" | + | {| class="wikitable sortable" |
! Software | ! Software | ||
! How | ! How | ||
| Line 43: | Line 46: | ||
| <tt class="enter">sudo apt-get install ttf-mscorefonts-installer</tt> | | <tt class="enter">sudo apt-get install ttf-mscorefonts-installer</tt> | ||
| Used by [[Galaxy]]. | | Used by [[Galaxy]]. | ||
| + | |- | ||
| + | | python-dev | ||
| + | | <tt>sudo apt-get install python-dev </tt> | ||
| + | | Used in [[Galaxy]]. | ||
| + | |- | ||
| + | | python-setuptools | ||
| + | | <tt>sudo apt-get install python-setuptools</tt> | ||
| + | | Used in [[Galaxy]]. | ||
| + | |- | ||
| + | | python-pip | ||
| + | | <tt>sudo apt-get install python-pip</tt> | ||
| + | | Used in [[Galaxy]]. | ||
| + | |- | ||
| + | | bx-python scripts | ||
| + | | <tt>sudo pip install bx-python</tt> | ||
| + | | Scripts used by Galaxy | ||
|} | |} | ||
Revision as of 21:30, 2 June 2011
This page or section is under construction.
This page will be used for the Genome 101 Workshop at Arthropod Genomics 2011.
VMware Image
A VMware image will be made available to participants of the workshop. We will use this image during the workshop
System Configuration
This section attempts to track what we did to create the VMware image
| Operating System | Ubuntu 11.04, 64 bit client. This is a popular Linux distribution |
|---|---|
| Memory | 2 GB. If you run this on a system that has 2 gigabytes or less of memory, please decrease this number |
| Disk | 80 GB. This is allocated 2 GB at a time, as needed, but VMware. |
| Networking | NAT |
| Username | gmod |
| Password |
Installed Prerequisite Software
GMOD components have a variety of prerequisite software that needs to be installed. Here is a list of what was installed so we could install and run GMOD software.
| Software | How | Comments |
|---|---|---|
| Mercurial | sudo apt-get install mercurial | Revision control system used by Galaxy |
| Microsoft TrueType core fonts | sudo apt-get install ttf-mscorefonts-installer | Used by Galaxy. |
| python-dev | sudo apt-get install python-dev | Used in Galaxy. |
| python-setuptools | sudo apt-get install python-setuptools | Used in Galaxy. |
| python-pip | sudo apt-get install python-pip | Used in Galaxy. |
| bx-python scripts | sudo pip install bx-python | Scripts used by Galaxy |
