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PAG 2014

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Plant and Animal Genomes conference, aka PAG XXII

There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2014. In addition to the day-long workshop on GMOD tools, there are also posters and presentations from many GMOD users, as well as from developers of GMOD tools. See Scott Cain's flickr set of poster pictures that show GMOD software in use.

PAG XXII is followed by the GMOD Community Meeting on January 16th and 17th.

Core GMOD Content

There are a number of items focussed on the tools and services that GMOD provides. These are:

Date Time Session Location Topic
11 Jan. (Sat.) 4:00 pm - 6:10 pm Next Generation Genome Annotation and Analysis Towne MAKER
12 Jan. (Sun.) 1:30 pm - 3:40 pm Generic Genome Browser Workshop (VM Download) California GBrowse
13 Jan. (Mon.) 10:00 am - 11:30 am GMOD in the Cloud and GMOD in a Box Poster Grand Exhibit Hall see poster title
14 Jan (Tues.) 4:00 pm - 6:10 pm Galaxy for NGS Data Analysis: A Hands-on Workshop California Galaxy
15 Jan. (Wed.) 10:30 am - 5:00 pm GMOD Workshop Golden West see below

View the GMOD in the Cloud and GMOD in a Box: Instant Virtual Servers for Genomics Data poster.

All Day GMOD Workshop

The GMOD workshop on Wednesday January 15th will be held in the Golden West room. The schedule will be as follows:

Please note that the schedule on the PAG website does not include a lunch break. Please use the schedule below instead!

10:30 AM - 11:10 AM W395 - GMOD in the Cloud Scott Cain, GMOD Coordinator
11:10 AM - 11:50 AM W396 - URGI Plant and Fungi Platform: Distributed Resources through GMOD Tools URGI team
11:50 AM - 12:30 PM W397 - Galaxy CloudMan: A Gentle Introduction to Data Analysis on the Cloud, Slides Dave Clements, Galaxy Project
1:30 PM - 2:10 PM W398 - JBrowse: A Next-Generation Genome Browser Robert Buels, JBrowse developer
2:10 PM - 2:50 PM W399 - MAKER Carson Holt, MAKER developer
3:05 PM - 3:45 PM W400 - WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation Robert Buels, JBrowse developer, Ed Lee WebApollo developer
3:45 PM - 4:25 PM W401 - Tripal Lacey-Anne Sanderson, Stephen P. Ficklin, Tripal developers

GMOD Consumers and Providers

There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

Date Event Details Location
Saturday 11th January
10:30 am - 12:40 pm DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom California
10:30 am - 12:40 pm Managing Crop Phenotype Data Pacific Salon 2
1:30 pm - 3:40 pm Computer Demos 1 California
4:00 pm - 6:10 pm Next Generation Genome Annotation and Analysis Towne
Sunday 12th January
10:30 am - 12:40 pm Solanaceae Pacific Salon 1
1:30 pm - 3:40 pm Generic Genome Browser California
4:00 pm - 6:10 pm Coffee Genomics Pacific Salon 4-5 (2nd Floor)
Monday 13th January
7:00 am - 10:00 pm Bioenergy Grand Exhibit Hall
10:00 am - 11:30 am #P428: Identification of Candidate Genes at Rvi19 and Rvi20, Two Apple Scab Resistance Loci in the ‘Honeycrisp’ Apple (Malus x domestica) Poster session
10:00 am - 11:30 am #P594: Genome-Wide DNA Methylation Profile of the Muscle (longissimus dorsi) Tissue in Swine Poster session
10:00 am - 11:30 am #P986: ATGC Transcriptomics: An Application to Explore and Analyze de novo Transcriptomic Data Poster session
10:00 am - 11:30 am #P988: The South Green Bioinformatics Platform Poster session
10:00 am - 11:30 am #P994: Intermine Webservices for Phytozome Poster session
10:00 am - 11:30 am #P1008: Bioinformatic Solutions in Forest Genomics: Accessing the Treegenes Database Poster session
10:00 am - 11:30 am #P1014: Bovine Genome Database: Resources for Re-Annotating the Bos taurus Genome Poster session
10:00 am - 11:30 am #P1022: GMOD in the Cloud and GMOD in a Box Poster session
10:00 am - 11:30 am #P1038: Defining haplotypes in genic and non-genic regions using user specified window size Poster session
10:00 am - 11:30 am #P1050: Integrative System for Gene Family Gathering and Analysis in a Context of Crops’ Stress Response Study Poster session
12:50 pm - 3:00 pm Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium Pacific Salon 6-7 (2nd Floor)
12:50 pm - 3:00 pm Computer Demos 2 California
12:50 pm - 3:00 pm Generation Challenge Program Royal Palm Salon 4,5,6
3:00 pm - 4:30 pm #P723: Assembly and Annotation of the Etheostoma tallapoosae Genome Poster session
3:00 pm - 4:30 pm #P981: Crop Ontology, a Resource for Enabling Access to Breeders' Data Poster session
3:00 pm - 4:30 pm #P1005: The Legume Information System 2014 Poster session
3:00 pm - 4:30 pm #P1007: Accessing SGN Genomes through Tools Poster session
3:00 pm - 4:30 pm #P1011: Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated By the Research Communities Poster session
3:00 pm - 4:30 pm #P1013: Hymenoptera Genome Database: 2014 Update Poster session
3:00 pm - 4:30 pm #P1015: Annotation of the Salix purpurea L. Genome and Gene Families Important for Biomass Production Poster session
3:00 pm - 4:30 pm #P1023: Crop>pedia Poster session
3:00 pm - 4:30 pm #P1099: Re-Annotation of the Strawberry (Fragaria vesca) Genome Poster session
Tuesday 14th January
10:30 am - 12:40 pm Banana Genomics Pacific Salon 6-7 (2nd Floor)
10:30 am - 12:40 pm SGN Workshop - Solanaceae Genomes, Tools, and the Breeder’s Toolbox Towne
4:00 pm - 6:10 pm Galaxy for NGS Data Analysis: A Hands-on Workshop California
Wednesday 15th January
10:30 am - 5:00 pm GMOD Golden West